Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Sara Knaack"'
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-18 (2019)
Existing computational approaches to predict long-range regulatory interactions do not fully exploit high-resolution Hi-C datasets. Here the authors present a Random Forests regression-based approach to predict high-resolution Hi-C counts using one-d
Externí odkaz:
https://doaj.org/article/371269a5f21c4aab82d477791ec36389
Autor:
Alireza Fotuhi Siahpirani, Sara Knaack, Deborah Chasman, Morten Seirup, Rupa Sridharan, Ron Stewart, James Thomson, Sushmita Roy
Publikováno v:
Genome Research. 32:1367-1384
Changes in transcriptional regulatory networks can significantly alter cell fate. To gain insight into transcriptional dynamics, several studies have profiled bulk multi-omic data sets with parallel transcriptomic and epigenomic measurements at diffe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::599bf7044f7a598fe1cb9a2bc07797e4
https://doi.org/10.1101/gr.276542.121
https://doi.org/10.1101/gr.276542.121
Autor:
Thomas B Irving, Sanhita Chakraborty, Lucas Gontijo Silva Maia, Sara Knaack, Daniel Conde, Henry W Schmidt, Paolo M Triozzi, Carl H Simmons, Sushmita Roy, Matias Kirst, Jean-Michel Ané
Publikováno v:
Plant physiology. 190(3)
The transcription factor NODULE INCEPTION (NIN) has been studied extensively for its multiple roles in root nodule symbiosis within plants of the nitrogen-fixing clade (NFC) that associate with soil bacteria, such as rhizobia and Frankia. However, NI
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0db11ad5b244d706dd0a50e4777a5bae
https://pubmed.ncbi.nlm.nih.gov/35929094
https://pubmed.ncbi.nlm.nih.gov/35929094
Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula.
Autor:
Knaack, Sara A.1 (AUTHOR), Conde, Daniel2 (AUTHOR), Chakraborty, Sanhita3 (AUTHOR), Balmant, Kelly M.2 (AUTHOR), Irving, Thomas B.3 (AUTHOR), Maia, Lucas Gontijo Silva3 (AUTHOR), Triozzi, Paolo M.2 (AUTHOR), Dervinis, Christopher2 (AUTHOR), Pereira, Wendell J.2 (AUTHOR), Maeda, Junko3 (AUTHOR), Schmidt, Henry W.2 (AUTHOR), Ané, Jean-Michel3,4 (AUTHOR), Kirst, Matias2,5 (AUTHOR) mkirst@ufl.edu, Roy, Sushmita1,6,7 (AUTHOR) sroy@biostat.wisc.edu
Publikováno v:
BMC Biology. 11/9/2022, Vol. 20 Issue 1, p1-22. 22p.
Autor:
Irving, Thomas B., Chakraborty, Sanhita, Maia, Lucas Gontijo Silva, Knaack, Sara, Conde, Daniel, Schmidt, Henry W., Triozzi, Paolo M., Simmons, Carl H., Roy, Sushmita, Kirst, Matias, Ané, Jean-Michel
Publikováno v:
Plant Physiology; Nov2022, Vol. 190 Issue 3, p1699-1714, 16p
Autor:
Pereira, Wendell J., Knaack, Sara, Chakraborty, Sanhita, Conde, Daniel, Folk, Ryan A., Triozzi, Paolo M., Balmant, Kelly M., Dervinis, Christopher, Schmidt, Henry W., Ané, Jean‐Michel, Roy, Sushmita, Kirst, Matias
Publikováno v:
New Phytologist; Apr2022, Vol. 234 Issue 2, p634-649, 16p
Publikováno v:
BMC Systems Biology. 2/9/2016, p1-11. 11p.
Autor:
Siahpirani, Alireza F., Roy, Sushmita
Publikováno v:
Nucleic Acids Research; Feb2017, Vol. 45 Issue 4, p1-22, 22p, 1 Color Photograph, 3 Charts, 7 Graphs
Autor:
Haixu Tang
This book constitutes the refereed proceedings of the 27th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2023, held in Istanbul, Turkey, during April 16–19, 2023.The 11 regular and 33 short papers presented
