Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures

Autor: Munro, Sarah A., Lund, Steve P., Pine, P. Scott, Binder, Hans, Clevert, Djork-Arné, Conesa, Ana, Dopazo, Joaquin, Fasold, Mario, Hochreiter, Sepp, Hong, Huixiao, Jafari, Nederah, Kreil, David P., Łabaj, Paweł P., Li, Sheng, Liao, Yang, Lin, Simon, Meehan, Joseph, Mason, Christopher E., Santoyo, Javier, Setterquist, Robert A., Shi, Leming, Shi, Wei, Smyth, Gordon K., Stralis-Pavese, Nancy, Su, Zhenqiang, Tong, Weida, Wang, Charles, Wang, Jian, Xu, Joshua, Ye, Zhan, Yang, Yong, Yu, Ying, Salit, Marc

Publikováno v: Nat. Commun. (2014) 5:5125

There is a critical need for standard approaches to assess, report, and compare the technical performance of genome-scale differential gene expression experiments. We assess technical performance with a proposed "standard" dashboard of metrics derive

Externí odkaz: http://arxiv.org/abs/1406.4893

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A map of human microRNA variation uncovers unexpectedly high levels of variability

Autor: Carbonell, Jose, Alloza, Eva, Arce, P., Borrego, Salud, Santoyo, Javier, Ruiz Ferrer, Macarena, Antiñolo Gil, Guillermo, Dopazo, Joaquín

Publikováno v: idUS: Depósito de Investigación de la Universidad de Sevilla
Universidad de Sevilla (US)
idUS. Depósito de Investigación de la Universidad de Sevilla
instname

Background: MicroRNAs (miRNAs) are key components of the gene regulatory network in many species. During the past few years, these regulatory elements have been shown to be involved in an increasing number and range of diseases. Consequently, the com

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::56e7a6ef5afe5522ced300c7f9be9b84

New challenges in gene expression data analysis and the extended GEPAS

Autor: Herrero, Javier, Vaquerizas, Juan M., Al-Shahrour, Fátima, Conde, Lucía, Mateos, Álvaro, Santoyo, Javier, Díaz-Uriarte, Ramón, Dopazo, Joaquin

Publikováno v: Biblos-e Archivo. Repositorio Institucional de la UAM
instname
Herrero, J, Vaquerizas, J M, Al-Shahrour, F, Conde, L, Mateos, Á, Santoyo, J, Díaz-Uriarte, R & Dopazo, J 2004, ' New challenges in gene expression data analysis and the extended GEPAS ', Nucleic Acids Research, vol. 32, no. suppl_2, pp. W485-W491 . https://doi.org/10.1093/nar/gkh421
Spanish Bioinformatics Conference

Since the first papers published in the late nineties, including, for the first time, a comprehensive analysis of microarray data, the number of questions that have been addressed through this technique have both increased and diversified. Initially,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88e148dd66dcd7c39696ad4c8b4b6803
http://hdl.handle.net/10486/678558