Integrated genomic view of SARS-CoV-2 in India [version 1; peer review: 2 approved]

Autor: Pramod Kumar, Rajesh Pandey, Pooja Sharma, Mahesh S. Dhar, Vivekanand A., Bharathram Uppili, Himanshu Vashisht, Saruchi Wadhwa, Nishu Tyagi, Saman Fatihi, Uma Sharma, Priyanka Singh, Hemlata Lall, Meena Datta, Poonam Gupta, Nidhi Saini, Aarti Tewari, Bibhash Nandi, Dhirendra Kumar, Satyabrata Bag, Deepanshi Gahlot, Surabhi Rathore, Nidhi Jatana, Varun Jaiswal, Hema Gogia, Preeti Madan, Simrita Singh, Prateek Singh, Debasis Dash, Manju Bala, Sandhya Kabra, Sujeet Singh, Mitali Mukerji, Lipi Thukral, Mohammed Faruq, Anurag Agrawal, Partha Rakshit

Publikováno v: Wellcome Open Research, Vol 5 (2020)

Background: India first detected SARS-CoV-2, causal agent of COVID-19 in late January 2020, imported from Wuhan, China. From March 2020 onwards, the importation of cases from countries in the rest of the world followed by seeding of local transmissio

Externí odkaz: https://doaj.org/article/937edc6f10644dee9335728c900b2090

Understanding the mechanism of the SARS CoV-2 coinfection with other respiratory viruses

Autor: Kalaiarasan Ponnusamy, RadhaKrishnan Venkatraman Srinivasan, Robin Marwal, Meena Datta, Mahesh Shankar Dhar, Urmila Chaudhary, Uma Sharma, Swati Kumari, Kalpana Sharma, Hema Gogia, Preeti Madan, Sandhya Kabra, Partha Rakshit

Coinfections have a potential role in increased morbidity and mortality rates during pandemics. Our investigation is aimed at evaluating the viral coinfection prevalence in COVID-19 patients. Rapid diagnostic tests are tools with a paramount impact b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f892c2b5af51b54f8a9c71935a62d17d
https://doi.org/10.1101/2022.12.15.520197

Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

Autor: Ankit K Pathak, Gyan Prakash Mishra, Bharathram Uppili, Safal Walia, Saman Fatihi, Tahseen Abbas, Sofia Banu, Arup Ghosh, Amol Kanampalliwar, Atimukta Jha, Sana Fatma, Shifu Aggarwal, Mahesh Shanker Dhar, Robin Marwal, Venkatraman Srinivasan Radhakrishnan, Kalaiarasan Ponnusamy, Sandhya Kabra, Partha Rakshit, Rahul C Bhoyar, Abhinav Jain, Mohit Kumar Divakar, Mohamed Imran, Mohammed Faruq, Divya Tej Sowpati, Lipi Thukral, Sunil K Raghav, Mitali Mukerji

Publikováno v: Nucleic acids research. 50(3)

During the course of the COVID-19 pandemic, large-scale genome sequencing of SARS-CoV-2 has been useful in tracking its spread and in identifying variants of concern (VOC). Viral and host factors could contribute to variability within a host that can

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d95acfdd1c0a18f9bf7de235c8b9fa78
https://pubmed.ncbi.nlm.nih.gov/35048970

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India

Autor: Mohit Kumar Divakar, Sandhya Kabra, Namita Soni, Preeti Madan, Rahul C. Bhoyar, Lipi Thukral, Shantanu Sengupta, Urmila Chaudhary, Uma Sharma, Hema Gogia, Hemlata Lall, Radhakrishnan Vs, Bani Jolly, Sujeet Kumar Singh, Vinay Nandicoori, Debasis Dash, Pooja Sharma, Charles Whittaker, Partha Rakshit, Manoj Kumar Singh, Arvinden Vr, Ravindra K. Gupta, Thomas A. Mellan, Ranjeet Maurya, Kalaiarasan Ponnusamy, Meena Datta, Neha Jha, Mohamed Imran, Salwa Naushin, Vivekanand A, Rajat Ujjainiya, Priyanka Singh, Swapnil Mishra, Karthik Bharadwaj Tallapaka, Viren Sardana, Seth Flaxman, Himanshu Chauhan, Anurag Agrawal, Rajesh Pandey, Mercy Rophina, Mohammed Faruq, Sanket Kulkarni, Divya Tej Sowpati, Nitin Bhatheja, Robin Marwal, Samir Bhatt, Mahesh Shanker Dhar, Saman Fatihi, Priyanka Mehta, Vigneshwar Senthivel

Publikováno v: Dhar, M S, Marwal, R, Radhakrishnan, V S, Ponnusamy, K, Jolly, B, Bhoyar, R C, Sardana, V, Naushin, S, Rophina, M, Mellan, T A, Mishra, S, Whittaker, C, Fatihi, S, Datta, M, Singh, P, Sharma, U, Ujjainiya, R, Bhatheja, N, Divakar, M K, Singh, M K, Imran, M, Senthivel, V, Maurya, R, Jha, N, Mehta, P, Vivekanand, A, Sharma, P, Arvinden, V R, Chaudhary, U, Soni, N, Thukral, L, Flaxman, S, Bhatt, S, Pandey, R, Dash, D, Faruq, M, Lall, H, Gogia, H, Madan, P, Kulkarni, S, Chauhan, H, Sengupta, S, Kabra, S, Gupta, R K, Singh, S K, Agrawal, A & Rakshit, P 2021, ' Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India ', Science, vol. 374, no. 6570, pp. 995-999 . https://doi.org/10.1126/science.abj9932
Science (New York, N.Y.)

Delhi, the national capital of India, experienced multiple severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of >50% by 2021. During April 2021, the city became overwhelmed by COVID-1

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c812e2833a390d9c48d2ef2e03ebcb64
https://curis.ku.dk/portal/da/publications/genomic-characterization-and-epidemiology-of-an-emerging-sarscov2-variant-in-delhi-india(8c660a11-5e42-4e65-9b05-3463b4687621).html

A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry

Autor: Sridhar Sivasubbu, Hema Gogia, Partha Rakshit, Himanshu Vashisht, Praveen Singh, Arjun Ray, Meena Dutta, Gyan Ranjan, Rahul Chakraborty, Robin Marwal, Shantanu Sengupta, Hemlata Lall, Akash Kumar Bhaskar, Sujeet Kumar Singh, Debasis Dash, Anurag Raj, Priyanka Singh, Pramod Kumar, Parth Garg, Anurag Agrawal, Mahesh Shanker Dhar, Radhakrishan V S, Uma Sharma, Shalini Pradhan, Preeti Madan, Mohamed Imran, Sandhya Kabra

In the last few months, there has been a global catastrophic outbreak of severe acute respiratory syndrome disease caused by the novel corona virus SARS-CoV-2 affecting millions of people worldwide. Early diagnosis and isolation is key to contain the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::333f8051346d5613e2e7ad27b8c1cd66
https://doi.org/10.1101/2020.07.27.20161836