Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Sanchayita, Sen"'
Autor:
Stephen Anyango, Sanchayita Sen, David Sehnal, Mihaly Varadi, Deepti Gupta, Pauline Haslam, Lora Mak, Matthew J. Conroy, David R. Armstrong, Jose M. Dana, Younes Alhroub, John M. Berrisford, Nurul Nadzirin, Abhik Mukhopadhyay, Aleksandras Gutmanas, Gerard J. Kleywegt, Sameer Velankar, Mandar Deshpande, Saqib Mir, Oliver S. Smart, Alice R. Clark, Typhaine Paysan-Lafosse
Publikováno v:
Nucleic Acids Research
The Protein Data Bank in Europe (PDBe, pdbe.org) is actively engaged in the deposition, annotation, remediation, enrichment and dissemination of macromolecular structure data. This paper describes new developments and improvements at PDBe addressing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::219259d279ff775b2fd386f52f8932a8
https://doi.org/10.1093/nar/gkx1070
https://doi.org/10.1093/nar/gkx1070
Autor:
Marina Zhuravleva, Ezra Peisach, Monica Sekharan, Glen van Ginkel, Reiko Igarashi, Jasmine Young, M. Saqib Mir, Lora Mak, Dimitris Dimitropoulos, Raul Sala, David R. Armstrong, Sanchayita Sen, Sameer Velankar, Gerard J. Kleywegt, Li Chen, Lihua Tan, Swanand Gore, Reiko Yamashita, Sutapa Ghosh, Eduardo Sanz-García, Zukang Feng, John D. Westbrook, Vladimir Guranovic, Yu-He Liang, Aleksandras Gutmanas, Thomas J. Oldfield, Brian P. Hudson, Huanwang Yang, Minyu Chen, Guanghua Gao, G. Jawahar Swaminathan, Eldon L. Ulrich, Yasuyo Ikegawa, Naohiro Kobayashi, Irina Persikova, Luigi Di Costanzo, Steve Mading, John L. Markley, Chenghua Shao, Helen M. Berman, Luana Rinaldi, Ardan Patwardhan, John M. Berrisford, Abhik Mukhopadhyay, Haruki Nakamura, Stephen K. Burley, Catherine L. Lawson, Pieter M. S. Hendrickx, Martha Quesada
Publikováno v:
Structure
PubMed Central
PubMed Central
OneDep, a unified system for deposition, biocuration, and validation of experimentally determined structures of biological macromolecules to the Protein Data Bank (PDB) archive, has been developed as a global collaboration by the Worldwide Protein Da
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba14ab042ffdb8e18b0349273b3164a7
Autor:
Marina Zhuravleva, Raul Sala, Lora Mak, Stephen K. Burley, Monica Sekharan, Oliver S. Smart, Brian P. Hudson, Ardan Patwardhan, Gerard J. Kleywegt, Alice R. Clark, Guanghua Gao, Kumaran Baskaran, Sutapa Ghosh, David R. Armstrong, Kayoko Nishiyama, John M. Berrisford, Ezra Peisach, Abhik Mukhopadhyay, G. Jawahar Swaminathan, Huanwang Yang, Minyu Chen, Catherine L. Lawson, Thomas J. Oldfield, Junko Sato, Zukang Feng, Helen M. Berman, Yumiko Kengaku, Chenghua Shao, Glen van Ginkel, Irina Persikova, John L. Markley, Genji Kurisu, Yasuyo Ikegawa, Jasmine Young, Pieter M. S. Hendrickx, Luigi Di Costanzo, Aleksandras Gutmanas, John D. Westbrook, Reiko Igarashi, Buvaneswari Coimbatore Narayanan, Li Chen, Eduardo Sanz-García, Vladimir Guranovic, Yu-He Liang, Haruki Nakamura, Gaurav Sahni, Sameer Velankar, Sanchayita Sen, Lihua Tan, Swanand Gore, Dimitris Dimitropoulos
Publikováno v:
Database
Database: The Journal of Biological Databases and Curation
PubMed Central
Database: The Journal of Biological Databases and Curation
PubMed Central
The Protein Data Bank (PDB) is the single global repository for experimentally determined 3D structures of biological macromolecules and their complexes with ligands. The worldwide PDB (wwPDB) is the international collaboration that manages the PDB a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0971262380065fa844429033dae13941
https://doi.org/10.1093/database/bay002
https://doi.org/10.1093/database/bay002
Autor:
Sanchayita Sen, Thomas J. Oldfield, Aleksandras Gutmanas, Ardan Patwardhan, Gerard J. Kleywegt, Sameer Velankar
Publikováno v:
Acta Crystallographica Section D: Biological Crystallography
The integration of structural data on atomistic to cellular scales with genetic, taxonomic and functional information is discussed. The challenges to the PDB and EMDB archives and some pertinent developments at PDBe to address these are discussed.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a64d902e0654f7b90a6920e48d9275f
https://doi.org/10.1107/s0907444913001157
https://doi.org/10.1107/s0907444913001157
Autor:
Sameer, Velankar, Younes, Alhroub, Anaëlle, Alili, Christoph, Best, Harry C, Boutselakis, Ségolène, Caboche, Matthew J, Conroy, Jose M, Dana, Glen, van Ginkel, Adel, Golovin, Swanand P, Gore, Aleksandras, Gutmanas, Pauline, Haslam, Miriam, Hirshberg, Melford, John, Ingvar, Lagerstedt, Saqib, Mir, Laurence E, Newman, Tom J, Oldfield, Chris J, Penkett, Jorge, Pineda-Castillo, Luana, Rinaldi, Gaurav, Sahni, Grégoire, Sawka, Sanchayita, Sen, Robert, Slowley, Alan Wilter, Sousa da Silva, Antonio, Suarez-Uruena, G Jawahar, Swaminathan, Martyn F, Symmons, Wim F, Vranken, Michael, Wainwright, Gerard J, Kleywegt
Publikováno v:
Nucleic Acids Research
The Protein Data Bank in Europe (PDBe; pdbe.org) is actively involved in managing the international archive of biomacromolecular structure data as one of the partners in the Worldwide Protein Data Bank (wwPDB; wwpdb.org). PDBe also develops new tools
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::909420b807ca0f164a3c162f52dd2f54
https://doi.org/10.1093/nar/gkq985
https://doi.org/10.1093/nar/gkq985
Autor:
Michael K. Johnson, Archer D. Smith, Robert Y. Igarashi, Sanchayita Sen, Lance C. Seefeldt, John W. Peters
Publikováno v:
Biochemistry. 43:1787-1797
The crystal structure of a nitrogenase Fe protein single site deletion variant reveals a distinctly new conformation of the Fe protein and indicates that, upon binding of MgATP, the Fe protein undergoes a dramatic conformational change that is largel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ed8216737974b6833837000b9161ea6
https://doi.org/10.1021/bi0358465
https://doi.org/10.1021/bi0358465
Autor:
Brian P. Hudson, Gaurav Sahni, John M. Berrisford, Matthew J. Conroy, Abhik Mukhopadhyay, Ezra Peisach, Irina Persikova, Junko Sato, Sutapa Ghosh, Yumiko Kengaku, Yu-He Liang, Luigi Di Costanzo, Buvaneswari Coimbatore Narayanan, Monica Sekharan, Marina Zhuravleva, Sanchayita Sen, Lihua Tan, Shuchismita Dutta, Reiko Igarashi, Jasmine Young, Guanghua Gao, Chenghua Shao, Minyu Chen
Publikováno v:
Database: The Journal of Biological Databases and Curation
The Protein Data Bank (PDB) is the single global repository for three-dimensional structures of biological macromolecules and their complexes, and its more than 100 000 structures contain more than 20 000 distinct ligands or small molecules bound to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd5a7fff69a51c252644b8839980870b
https://pubmed.ncbi.nlm.nih.gov/25425036
https://pubmed.ncbi.nlm.nih.gov/25425036
Autor:
Robert A. Slowley, A. W. Sousa Da Silva, Christopher J. Penkett, J. Swaminathan, Sanchayita Sen, C. Best, Richard H. Newman, Thomas J. Oldfield, Anne Pajon, A. Golovin, Dimitris Dimitropoulos, Gerard J. Kleywegt, C. H. Boutselakis, Eugene Krissinel, Gaurav Sahni, G. van Ginkel, A. Suarez-Uruena, Sameer Velankar, Kim Henrick, Wim F. Vranken, M. John, J. Pineda-Castillo, B. Beuth, N. D. Cobley, Miriam Hirshberg
Publikováno v:
Nucleic Acids Research
The Protein Data Bank in Europe (PDBe) (http://www.ebi.ac.uk/pdbe/) is actively working with its Worldwide Protein Data Bank partners to enhance the quality and consistency of the international archive of bio-macromolecular structure data, the Protei
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6197649ed4dc92b4b3de8a750865e312
https://biblio.vub.ac.be/vubir/pdbe-protein-data-bank-in-europe(fefc6907-a3a2-4b32-a55f-5e174fea2fce).html
https://biblio.vub.ac.be/vubir/pdbe-protein-data-bank-in-europe(fefc6907-a3a2-4b32-a55f-5e174fea2fce).html
Autor:
John W. Peters, Sanchayita Sen
Publikováno v:
Proteins. 62(2)
The nitrogenase Fe protein is a key component of the biochemical machinery responsible for the process of biological nitrogen fixation. The Fe protein is a member of a class of nucleotide-binding proteins that couple the binding and hydrolysis of nuc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::28c986d262fe605d19d607a56632cd5b
https://pubmed.ncbi.nlm.nih.gov/16315272
https://pubmed.ncbi.nlm.nih.gov/16315272
Autor:
Lance C. Seefeldt, Sanchayita Sen, Arathi M. Krishnakumar, Michael K. Johnson, Jammi McClead, John W. Peters, Robert K. Szilagyi
Publikováno v:
Journal of inorganic biochemistry. 100(5-6)
In the present work, determination of the structure of the nitrogenase Leu 127 deletion variant Fe protein with MgATP bound is presented, along with density functional theory calculations, to provide insights into the roles of MgATP in the nitrogenas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31330463bef453337420105d6f74fb68
https://pubmed.ncbi.nlm.nih.gov/16616373
https://pubmed.ncbi.nlm.nih.gov/16616373