Zobrazeno 1 - 10
of 67
pro vyhledávání: '"Samuel S Shepard"'
Autor:
David VanInsberghe, Dillon S McBride, Juliana DaSilva, Thomas J Stark, Max S Y Lau, Samuel S Shepard, John R Barnes, Andrew S Bowman, Anice C Lowen, Katia Koelle
Publikováno v:
PLoS Pathogens, Vol 20, Iss 4, p e1012131 (2024)
Patterns of within-host influenza A virus (IAV) diversity and evolution have been described in natural human infections, but these patterns remain poorly characterized in non-human hosts. Elucidating these dynamics is important to better understand I
Externí odkaz:
https://doaj.org/article/8d8c3a69dadc4e37976e477139889782
Autor:
Colin A Russell, Peter M Kasson, Ruben O Donis, Steven Riley, John Dunbar, Andrew Rambaut, Jason Asher, Stephen Burke, C Todd Davis, Rebecca J Garten, Sandrasegaram Gnanakaran, Simon I Hay, Sander Herfst, Nicola S Lewis, James O Lloyd-Smith, Catherine A Macken, Sebastian Maurer-Stroh, Elizabeth Neuhaus, Colin R Parrish, Kim M Pepin, Samuel S Shepard, David L Smith, David L Suarez, Susan C Trock, Marc-Alain Widdowson, Dylan B George, Marc Lipsitch, Jesse D Bloom
Publikováno v:
eLife, Vol 3 (2014)
Assessing the pandemic risk posed by specific non-human influenza A viruses is an important goal in public health research. As influenza virus genome sequencing becomes cheaper, faster, and more readily available, the ability to predict pandemic pote
Externí odkaz:
https://doaj.org/article/232a6231af114a72bac962eb34beb8de
Publikováno v:
PLoS ONE, Vol 9, Iss 1, p e86921 (2014)
The evolutionary classification of influenza genes into lineages is a first step in understanding their molecular epidemiology and can inform the subsequent implementation of control measures. We introduce a novel approach called Lineage Assignment B
Externí odkaz:
https://doaj.org/article/50bd61ccf89b4e08ac6d1012b0dbffc6
Autor:
David A Shore, Hua Yang, Amanda L Balish, Samuel S Shepard, Paul J Carney, Jessie C Chang, Charles T Davis, Ruben O Donis, Julie M Villanueva, Alexander I Klimov, James Stevens
Publikováno v:
PLoS ONE, Vol 8, Iss 9, p e75209 (2013)
Antigenic variation among circulating H5N1 highly pathogenic avian influenza A viruses mandates the continuous production of strain-specific pre-pandemic vaccine candidates and represents a significant challenge for pandemic preparedness. Here we ass
Externí odkaz:
https://doaj.org/article/d83041ac521b487fb9b695b5850d36eb
Autor:
Kristine A. Lacek, Benjamin L. Rambo-Martin, Dhwani Batra, Xiao-yu Zheng, Norman Hassell, Hitoshi Sakaguchi, Thomas Peacock, Natalie Groves, Matthew Keller, Malania M. Wilson, Mili Sheth, Morgan L. Davis, Mark Borroughs, Jonathan Gerhart, Samuel S. Shepard, Peter W. Cook, Justin Lee, David E. Wentworth, John R. Barnes, Rebecca Kondor, Clinton R. Paden
Publikováno v:
Emerging Infectious Diseases. 28:1442-1445
To detect new and changing SARS-CoV-2 variants, we investigated candidate Delta-Omicron recombinant genomes from Centers for Disease Control and Prevention national genomic surveillance. Laboratory and bioinformatic investigations identified and vali
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::285195b6c2ba5d5b91a745bf5ec10ff5
https://doi.org/10.3201/eid2807.220526
https://doi.org/10.3201/eid2807.220526
Autor:
Kristine A. Lacek, Benjamin L. Rambo-Martin, Dhwani Batra, Xiao-yu Zheng, Hitoshi Sakaguchi, Thomas Peacock, Matthew Keller, Malania M. Wilson, Mili Sheth, Morgan L. Davis, Mark Borroughs, Jonathan Gerhart, Norman Hassell, Samuel S. Shepard, Peter W. Cook, Justin Lee, David E. Wentworth, John R. Barnes, Rebecca Kondor, Clinton R. Paden
Recombination between SARS-CoV-2 virus variants can result in different viral properties (e.g., infectiousness or pathogenicity). In this report, we describe viruses with recombinant genomes containing signature mutations from Delta and Omicron varia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3882fddd056d646bf527f9d7c06a8726
https://doi.org/10.1101/2022.03.19.484981
https://doi.org/10.1101/2022.03.19.484981
Autor:
Anastasia S, Lambrou, Philip, Shirk, Molly K, Steele, Prabasaj, Paul, Clinton R, Paden, Betsy, Cadwell, Heather E, Reese, Yutaka, Aoki, Norman, Hassell, Xiao-Yu, Zheng, Sarah, Talarico, Jessica C, Chen, M Steven, Oberste, Dhwani, Batra, Laura K, McMullan, Alison Laufer, Halpin, Summer E, Galloway, Duncan R, MacCannell, Rebecca, Kondor, John, Barnes, Adam, MacNeil, Benjamin J, Silk, Vivien G, Dugan, Heather M, Scobie, David E, Wentworth, Jason, Caravas, Nicholas A, Kovacs, Jonathan G, Gerhart, Han, Jia Ng, Andrew, Beck, Reina, Chau, Roxana, Cintron, Peter W, Cook, Christopher A, Gulvik, Dakota, Howard, Yunho, Jang, Kristen, Knipe, Kristine A, Lacek, Kara A, Moser, Adrian C, Paskey, Benjamin L, Rambo-Martin, Roopa R, Nagilla, Adam C, Retchless, Matthew W, Schmerer, Sandra, Seby, Samuel S, Shepard, Richard A, Stanton, Thomas J, Stark, Anna, Uehara, Yvette, Unoarumhi, Meghan L, Bentz, Alex, Burgin, Mark, Burroughs, Morgan L, Davis, Matthew W, Keller, Lisa M, Keong, Shoshona S, Le, Justin S, Lee, Joseph C, Madden Jr, Sarah, Nobles, D. Collins, Owuor, Jasmine, Padilla, Mili, Sheth, Malania M, Wilson
Publikováno v:
MMWR. Morbidity and mortality weekly report. 71(6)
Genomic surveillance is a critical tool for tracking emerging variants of SARS-CoV-2 (the virus that causes COVID-19), which can exhibit characteristics that potentially affect public health and clinical interventions, including increased transmissib
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::7e98fdb104aa9c7a286ea2815e2553dc
https://pubmed.ncbi.nlm.nih.gov/35389973
https://pubmed.ncbi.nlm.nih.gov/35389973
Autor:
Michelle A. Waltenburg, Melissa J. Whaley, Rebecca J. Chancey, Marisa A.P. Donnelly, Meagan R. Chuey, Raymond Soto, Noah G. Schwartz, Victoria T. Chu, Sadia Sleweon, David W. McCormick, Anna Uehara, Adam C. Retchless, Suxiang Tong, Jennifer M. Folster, Marla Petway, Natalie J. Thornburg, Jan Drobeniuc, Brett Austin, Meghan M. Hudziec, Ginger Stringer, Bernadette A. Albanese, Sarah E. Totten, Shannon R. Matzinger, J. Erin Staples, Marie E. Killerby, Laura J. Hughes, Almea Matanock, Mark Beatty, Jacqueline E. Tate, Hannah L. Kirking, Christopher H. Hsu, Alexis Alford, Samuel Baird, Laura Bankers, Jazmin Bello, Shanna Bolcen, Peter Browning, Peter W. Cook, Ebenezer David, Jennifer L. Harcourt, Geir Hareland, Molly C. Hetherington-Rauth, Diana Ir, Shilpi Jain, Tao Lily Jia, Ralen Johnson, Anna Kelleher, Gimin Kim, Yan Li, Brian Lynch, Daniel Mallal, Panagiotis Maniatis, Rachel Marine, Magdalena Medrzycki, John M. Metz, Anna Maria Montmayeur, Kimberly M. Moss, Han Jia Justin Ng, Van Nyugen, Kristina Ortiz, Clinton R. Paden, So Hee Park, Krista Queen, Alexandria E.B. Rossheim, Vera Semenova, Samuel S. Shepard, Azaibi Tamin, Ying Tao, Alexandra Tejada-Strop, Phili Wong, Briana Zellner, Jing Zhang
Publikováno v:
The Journal of pediatrics. 247
To assess the household secondary infection risk (SIR) of B.1.1.7 (Alpha) and non-Alpha lineages of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among children.During January to April 2021, we prospectively followed households with a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2b1125bfbb9325f9a55c4e3a5260681
https://pubmed.ncbi.nlm.nih.gov/35447121
https://pubmed.ncbi.nlm.nih.gov/35447121
Autor:
Jiani Chen, Xueting Qiu, Vasanthi Avadhanula, Samuel S. Shepard, Do‐Kyun Kim, James Hixson, Pedro A. Piedra, Justin Bahl
Publikováno v:
Influenza and other respiratory viruses. 16(3)
Human respiratory syncytial virus (RSV) is one of the leading causes of respiratory infections, especially in infants and young children. Previous RSV sequencing studies have primarily focused on partial sequencing of G gene (200-300 nucleotides) for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4699267f91fd3ca1a196fbd6dc2f7822
https://pubmed.ncbi.nlm.nih.gov/34894077
https://pubmed.ncbi.nlm.nih.gov/34894077
Autor:
Samuel S. Shepard, Ketaki Ganti, Susan A. Shriner, Anish Bagga, Anice C. Lowen, Juliana DaSilva, Katia Koelle, John R. Barnes
Publikováno v:
Viruses, Vol 13, Iss 509, p 509 (2021)
Viruses
Volume 13
Issue 3
Viruses
Volume 13
Issue 3
Reassortment among co-infecting influenza A viruses (IAVs) is an important source of viral diversity and can facilitate expansion into novel host species. Indeed, reassortment played a key role in the evolution of the last three pandemic IAVs. Observ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14391a4f445a09f219d9bf50799e4d8a
https://www.mdpi.com/1999-4915/13/3/509
https://www.mdpi.com/1999-4915/13/3/509