Influenza A virus reassortment is strain dependent.

Autor: Kishana Y Taylor, Ilechukwu Agu, Ivy José, Sari Mäntynen, A J Campbell, Courtney Mattson, Tsui-Wen Chou, Bin Zhou, David Gresham, Elodie Ghedin, Samuel L Díaz Muñoz

Publikováno v: PLoS Pathogens, Vol 19, Iss 3, p e1011155 (2023)

RNA viruses can exchange genetic material during coinfection, an interaction that creates novel strains with implications for viral evolution and public health. Influenza A viral genetic exchange can occur when genome segments from distinct strains r

Externí odkaz: https://doaj.org/article/aa4330c7fc2841db9856e7a9fea3756d

SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis.

Autor: David A Coil, Timothy Albertson, Shefali Banerjee, Greg Brennan, A J Campbell, Stuart H Cohen, Satya Dandekar, Samuel L Díaz-Muñoz, Jonathan A Eisen, Tracey Goldstein, Ivy R Jose, Maya Juarez, Brandt A Robinson, Stefan Rothenburg, Christian Sandrock, Ana M M Stoian, Daniel G Tompkins, Alexandre Tremeau-Bravard, Angela Haczku

Publikováno v: PLoS ONE, Vol 16, Iss 6, p e0253578 (2021)

RationaleThere is little doubt that aerosols play a major role in the transmission of SARS-CoV-2. The significance of the presence and infectivity of this virus on environmental surfaces, especially in a hospital setting, remains less clear.Objective

Externí odkaz: https://doaj.org/article/e8e489eea1df45e5aa006cfc7c4a97c2

Evaluating expert-based habitat suitability information of terrestrial mammals with GPS-tracking data

Autor: Maarten J. E. Broekman, Jelle P. Hilbers, Mark A. J. Huijbregts, Thomas Mueller, Abdullahi H. Ali, Henrik Andrén, Jeanne Altmann, Malin Aronsson, Nina Attias, Hattie L. A. Bartlam‐Brooks, Floris M. van Beest, Jerrold L. Belant, Dean E. Beyer, Laura Bidner, Niels Blaum, Randall B. Boone, Mark S. Boyce, Michael B. Brown, Francesca Cagnacci, Rok Černe, Simon Chamaillé‐Jammes, Nandintsetseg Dejid, Jasja Dekker, Arnaud L. J. Desbiez, Samuel L. Díaz‐Muñoz, Julian Fennessy, Claudia Fichtel, Christina Fischer, Jason T. Fisher, Ilya Fischhoff, Adam T. Ford, John M. Fryxell, Benedikt Gehr, Jacob R. Goheen, Morgan Hauptfleisch, A. J. Mark Hewison, Robert Hering, Marco Heurich, Lynne A. Isbell, René Janssen, Florian Jeltsch, Petra Kaczensky, Peter M. Kappeler, Miha Krofel, Scott LaPoint, A. David M. Latham, John D. C. Linnell, A. Catherine Markham, Jenny Mattisson, Emilia Patricia Medici, Guilherme de Miranda Mourão, Bram Van Moorter, Ronaldo G. Morato, Nicolas Morellet, Atle Mysterud, Stephen Mwiu, John Odden, Kirk A. Olson, Aivars Ornicāns, Nives Pagon, Manuela Panzacchi, Jens Persson, Tyler Petroelje, Christer Moe Rolandsen, David Roshier, Daniel I. Rubenstein, Sonia Saïd, Albert R. Salemgareyev, Hall Sawyer, Niels Martin Schmidt, Nuria Selva, Agnieszka Sergiel, Jared Stabach, Jenna Stacy‐Dawes, Frances E. C. Stewart, Jonas Stiegler, Olav Strand, Siva Sundaresan, Nathan J. Svoboda, Wiebke Ullmann, Ulrich Voigt, Jake Wall, Martin Wikelski, Christopher C. Wilmers, Filip Zięba, Tomasz Zwijacz‐Kozica, Aafke M. Schipper, Marlee A. Tucker

Publikováno v: Global ecology and biogeography : a journal of macroecology, vol 31, iss 8
Broekman, M J E, Hilbers, J P, Huijbregts, M A J, Mueller, T, Ali, A H, Andrén, H, Altmann, J, Aronsson, M, Attias, N, Bartlam-Brooks, H L A, van Beest, F M, Belant, J L, Beyer, D E, Bidner, L, Blaum, N, Boone, R B, Boyce, M S, Brown, M B, Cagnacci, F, Černe, R, Chamaillé-Jammes, S, Dejid, N, Dekker, J, L. J. Desbiez, A, Díaz-Muñoz, S L, Fennessy, J, Fichtel, C, Fischer, C, Fisher, J T, Fischhoff, I, Ford, A T, Fryxell, J M, Gehr, B, Goheen, J R, Hauptfleisch, M, Hewison, A J M, Hering, R, Heurich, M, Isbell, L A, Janssen, R, Jeltsch, F, Kaczensky, P, Kappeler, P M, Krofel, M, LaPoint, S, Latham, A D M, Linnell, J D C, Markham, A C, Mattisson, J, Medici, E P, de Miranda Mourão, G, Van Moorter, B, Morato, R G, Morellet, N, Mysterud, A, Mwiu, S, Odden, J, Olson, K A, Ornicāns, A, Pagon, N, Panzacchi, M, Persson, J, Petroelje, T, Rolandsen, C M, Roshier, D, Rubenstein, D I, Saïd, S, Salemgareyev, A R, Sawyer, H, Schmidt, N M, Selva, N, Sergiel, A, Stabach, J, Stacy-Dawes, J, Stewart, F E C, Stiegler, J, Strand, O, Sundaresan, S, Svoboda, N J, Ullmann, W, Voigt, U, Wall, J, Wikelski, M, Wilmers, C C, Zięba, F, Zwijacz-Kozica, T, Schipper, A M & Tucker, M A 2022, ' Evaluating expert-based habitat suitability information of terrestrial mammals with GPS-tracking data ', Global Ecology and Biogeography, vol. 31, no. 8, pp. 1526-1541 . https://doi.org/10.1111/geb.13523
Global Ecology and Biogeography, 31, 8, pp. 1526-1541
Global Ecology and Biogeography
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
Global ecology and biogeography, vol. 31, no. 8, pp. 1526-1541, 2022.
Global Ecology and Biogeography, 2022, 31 (8), pp.1526-1541. ⟨10.1111/geb.13523⟩
Global Ecology and Biogeography, 31, 1526-1541

Aim: Macroecological studies that require habitat suitability data for many species often derive this information from expert opinion. However, expert- based informa-tion is inherently subjective and thus prone to errors. The increasing availability

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fc5ea80536998bafee7369b76a58c4ad
https://escholarship.org/uc/item/7f20t5h7

Decision letter: Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies

Autor: Samuel L Díaz-Muñoz

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d6641f7fdae5864282b8985bf1322d34
https://doi.org/10.7554/elife.83479.sa1

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Autor: Steven R. Head, Emma Billings, Stephen Wandro, Jane M. Carlton, Alexandra Zhernakova, A. Murat Eren, Zhe Xue Quan, Anders S. Nilsson, Gyu Sung Cho, Udi Qimron, Martin M. Kowalewski, John Shimashita, Gillian A.O. Rice, Frank Møller Aarestrup, Elyse Stachler, Vito Adrian Cantu, Linsey C. Marr, Alessandro Rossi, Angela McCann, Colin Hill, Cristina García-Aljaro, Kristen M. Gulino, David A. Lipson, Rene S. Hendriksen, Bryan A. White, Bas E. Dutilh, Bashir Mukhtar Elwasila, Karla Mazankova, Alexander V. Tyakht, Julia M. Maritz, Ronan Strain, Rodrigo De la Iglesia, Ramy K. Aziz, Kyle Levi, Alan Twaddle, Alejandro Reyes Muñoz, Katelyn McNair, Alejandro A. Vega, Nathaniel J. Dominy, Abigail E. Asangba, Robert Edwards, Rasha Odeh, Olivia D. Nigro, Gunduz Ahmadov, Raúl R. Raya, Nam Nguyen, Charles M. A. P. Franz, Nicole Trefault, Adán Ramírez-Rojas, Michael P. Doane, Randall E. Junge, Patrick A. de Jonge, Jingyuan Fu, Taylor O'Connell, Mike Cranfield, German Tapia, Heikki Hyöty, Nicolás A. Villagra, Cisca Wijmenga, Henrike Zschach, Megan M. Morris, Franklin L. Nobrega, Elena N. Ilina, David Thomas McCarthy, Daniel Cazares, Silvia Monteiro, Lawrence Mugisha, Daniel A. Cuevas, Horst Neve, Przemyslaw Decewicz, John M. Haggerty, Ricardo Santos, Deepak Kumaresan, Shahar Molshanski-Mor, Andrew S. Whiteley, Benjamin Moreira-Grez, Rebecca M. Stumpf, Katrine Whiteson, Holly M. Norman, Jeremy J. Barr, Peter C. Fineran, Jeroen Wagemans, Samuel L. Díaz Muñoz, Kim Reasor, Elizabeth A. Dinsdale, Mitchell T. Irwin, Aaron J. Prussin, Mohammadali Khan Mirzaei, Maite Muniesa, Christelle Desnues, Montserrat Llagostera, Rob Lavigne, Abeer Alassaf, Tess Condeff, Petra Rainetova, María Mercedes Zambrano, Adrian Cazares, Elodie Ghedin, Alexander Kurilshikov, Lukasz Dziewit, Thomas C. Jeffries, Mary Ann Ugochi Ibekwe, Eugenia S. Lisitsyna, Juan Jofre, Pedro J. Torres, Maria Ohaeri, Mariana Piuri, Andrew Oliver, Steven R. Leigh, Ondrej Cinek, Stan J. J. Brouns, Josefa Antón, Pilar Cortés, Kyle Bibby, Lars C. Stene, Pablo Vinuesa, Scott T. Kelley

Publikováno v: Nature Microbiology
Nature Microbiology, 2019, 4, pp.1727-1736. ⟨10.1038/s41564-019-0494-6⟩
Nature Microbiology, 4, 1727. Nature Publishing Group
Nat Microbiol
Edwards, R A, Vega, A A, Norman, H M, Ohaeri, M, Levi, K, Dinsdale, E A, Cinek, O, Aziz, R K, McNair, K, Barr, J J, Bibby, K, Brouns, S J J, Cazares, A, de Jonge, P A, Desnues, C, Díaz Muñoz, S L, Fineran, P C, Kurilshikov, A, Lavigne, R, Mazankova, K, McCarthy, D T, Nobrega, F L, Reyes Muñoz, A, Tapia, G, Trefault, N, Tyakht, A V, Vinuesa, P, Wagemans, J, Zhernakova, A, Møller Aarestrup, F, Ahmadov, G, Alassaf, A, Anton, J, Asangba, A, Billings, E K, Cantu, V A, Carlton, J M, Cazares, D, Cho, G S, Condeff, T, Cortés, P, Cranfield, M, Cuevas, D A, De la Iglesia, R, Decewicz, P, Doane, M P, Dominy, N J, Dziewit, L, Elwasila, B M, Eren, A M, Franz, C, Fu, J, Garcia-Aljaro, C, Ghedin, E, Gulino, K M, Haggerty, J M, Head, S R, Hendriksen, R S, Hill, C, Hyöty, H, Ilina, E N, Irwin, M T, Jeffries, T C, Jofre, J, Junge, R E, Kelley, S T, Khan Mirzaei, M, Kowalewski, M, Kumaresan, D, Leigh, S R, Lipson, D, Lisitsyna, E S, Llagostera, M, Maritz, J M, Marr, L C, McCann, A, Molshanski-Mor, S, Monteiro, S, Moreira-Grez, B, Morris, M, Mugisha, L, Muniesa, M, Neve, H, Nguyen, N P, Nigro, O D, Nilsson, A S, O’Connell, T, Odeh, R, Oliver, A, Piuri, M, Prussin, A J, Qimron, U, Quan, Z X, Rainetova, P, Ramírez-Rojas, A, Raya, R, Reasor, K, Rice, G A O, Rossi, A, Santos, R, Shimashita, J, Stachler, E N, Stene, L C, Strain, R, Stumpf, R, Torres, P J, Twaddle, A, Ugochi Ibekwe, M A, Villagra, N, Wandro, S, White, B, Whiteley, A, Whiteson, K L, Wijmenga, C, Zambrano, M M, Zschach, H & Dutilh, B E 2019, ' Global phylogeography and ancient evolution of the widespread human gut virus crAssphage ', Nature Microbiology, vol. 4, pp. 1727-1736 . https://doi.org/10.1038/s41564-019-0494-6
Nature Microbiology, Nature Publishing Group, 2019, ⟨10.1038/s41564-019-0494-6⟩
Nature Microbiology, 4, 1727-1736
RUA. Repositorio Institucional de la Universidad de Alicante
Universidad de Alicante (UA)
Nature Microbiology, 4(10), 1727-1736. Nature Publishing Group
Nature Microbiology, 4, 10, pp. 1727-1736

Microbiomes are vast communities of microorganisms and viruses that populate all natural ecosystems. Viruses have been considered to be the most variable component of microbiomes, as supported by virome surveys and examples of high genomic mosaicism.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::765409da8f9e6a57d535c261c8666f7b
https://doi.org/10.1038/s41564-019-0494-6