Zobrazeno 1 - 10
of 33
pro vyhledávání: '"Samuel E. Barnett"'
Publikováno v:
mBio, Vol 14, Iss 2 (2023)
ABSTRACT Bacteria catalyze the formation and destruction of soil organic matter, but the bacterial dynamics in soil that govern carbon (C) cycling are not well understood. Life history strategies explain the complex dynamics of bacterial populations
Externí odkaz:
https://doaj.org/article/81af6afbaac14d9b981fab3d2f074721
Autor:
Samuel E. Barnett, Ali R. Cala, Julie L. Hansen, Jamie Crawford, Donald R. Viands, Lawrence B. Smart, Christine D. Smart, Daniel H. Buckley
Publikováno v:
Phytobiomes Journal, Vol 4, Iss 4, Pp 351-363 (2020)
Plant microbiomes contribute to plant fitness and crop yields through a variety of mechanisms. Determining variability in microbiome composition among individuals of a species, and identifying core microbiome membership, are essential first steps for
Externí odkaz:
https://doaj.org/article/87e932fe7a7b498aba8a87a0afb2ccdf
Autor:
Samuel E. Barnett, Daniel H. Buckley
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Background DNA-stable isotope probing (DNA-SIP) links microorganisms to their in-situ function in diverse environmental samples. Combining DNA-SIP and metagenomics (metagenomic-SIP) allows us to link genomes from complex communities to their
Externí odkaz:
https://doaj.org/article/1b72621a2dc043369b2efa28f7475da2
Publikováno v:
Environmental Microbiology. 24:5230-5247
SummarySoil dwelling microorganisms are key players in the terrestrial carbon cycle, driving both the degradation and stabilization of soil organic matter. Bacterial community structure and function vary with respect to land-use, yet the ecological d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbc889783e00abe6881ec55adaa24ed1
https://doi.org/10.1111/1462-2920.16146
https://doi.org/10.1111/1462-2920.16146
Autor:
Samuel E. Barnett, Ashley Shade
Soil microbiomes are essential mediators of ecosystem services, and their resistance and resilience to anthropogenic disturbances can have profound effects on soil function. However, we know little about the determinants of soil microbiome resilience
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::eb9c36122d73666d6fb1dba6e87e8981
https://doi.org/10.1101/2023.05.25.542271
https://doi.org/10.1101/2023.05.25.542271
Autor:
Samuel E. Barnett, Daniel H. Buckley
Publikováno v:
Environmental Microbiology.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bc598faf3c9ac257bd4db3c9b2808412
https://doi.org/10.1111/1462-2920.16395
https://doi.org/10.1111/1462-2920.16395
Autor:
Roland C. Wilhelm, Samuel E. Barnett, Tami L. Swenson, Nicholas D. Youngblut, Chantal N. Koechli, Benjamin P. Bowen, Trent R. Northen, Daniel H. Buckley
Publikováno v:
Appl Environ Microbiol
Applied and environmental microbiology, vol 88, iss 22
Applied and environmental microbiology, vol 88, iss 22
Tracking the metabolic activity of whole soil communities can improve our understanding of the transformation and fate of carbon in soils. We used stable isotope metabolomics to trace 13C from nine labeled carbon sources into the water-soluble metabo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::440eeb417cc40d55178f00c9ac8bb299
https://pubmed.ncbi.nlm.nih.gov/36300927
https://pubmed.ncbi.nlm.nih.gov/36300927
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
DNA Stable isotope probing (DNA-SIP) is a powerful method that links identity to function within microbial communities. The combination of DNA-SIP with multiplexed high throughput DNA sequencing enables simultaneous mapping of in situ assimilation dy
Externí odkaz:
https://doaj.org/article/e4dcefd9093f40b2bd8cd1470aeab813
Publikováno v:
PLoS ONE, Vol 13, Iss 1, p e0189616 (2018)
Combining high throughput sequencing with stable isotope probing (HTS-SIP) is a powerful method for mapping in situ metabolic processes to thousands of microbial taxa. However, accurately mapping metabolic processes to taxa is complex and challenging
Externí odkaz:
https://doaj.org/article/24d2c488a6514997a84caba085c05da1
Autor:
Carly R. Muletz-Wolz, Jose G. Almario, Samuel E. Barnett, Graziella V. DiRenzo, An Martel, Frank Pasmans, Kelly R. Zamudio, Luís Felipe Toledo, Karen R. Lips
Publikováno v:
Frontiers in Microbiology, Vol 8 (2017)
Symbiotic bacteria may dampen the impacts of infectious diseases on hosts by inhibiting pathogen growth. However, our understanding of the generality of pathogen inhibition by different bacterial taxa across pathogen genotypes and environmental condi
Externí odkaz:
https://doaj.org/article/8135ca74bbf14e969db808292b06eb40