Genomic reconstruction of the SARS-CoV-2 epidemic in England

Autor: Vöhringer, HS, Sanderson, T, Sinnott, M, De Maio, N, Nguyen, T, Goater, R, Schwach, F, Harrison, I, Hellewell, J, Ariani, CV, Gonçalves, S, Jackson, DK, Johnston, I, Jung, AW, Saint, C, Sillitoe, J, Suciu, M, Goldman, N, Panovska-Griffiths, J, Abnizova, I, Aigrain, L, Alderton, A, Ali, M, Allen, L, Amato, R, Anderson, R, Ariani, C, Austin-Guest, S, Bala, S, Barrett, J, Bassett, A, Battleday, K, Beal, J, Beale, M, Beaver, C, Bellany, S, Bellerby, T, Bellis, K, Berger, D, Berriman, M, Betteridge, E, Bevan, P, Binley, S, Bishop, J, Blackburn, K, Bonfield, J, Boughton, N, Bowker, S, Brendler-Spaeth, T, Bronner, I, Brooklyn, T, Buddenborg, SK, Bush, R, Caetano, C, Cagan, A, Carter, N, Cartwright, J, Monteiro, TC, Chapman, L, Chillingworth, T-J, Clapham, P, Clark, R, Clarke, A, Clarke, C, Cole, D, Cook, E, Coppola, M, Cornell, L, Cornwell, C, Corton, C, Crackett, A, Cranage, A, Craven, H, Craw, S, Crawford, M, Cutts, T, Dabrowska, M, Davies, M, Davies, R, Dawson, J, Day, C, Densem, A, Dibling, T, Dockree, C, Dodd, D, Dogga, S, Dorman, M, Dougan, G, Dougherty, M, Dove, A, Drummond, L, Drury, E, Dudek, M, Durham, J, Durrant, L, Easthope, E, Eckert, S, Ellis, P, Farr, B, Fenton, M, Ferrero, M, Flack, N, Fordham, H, Forsythe, G, Foulser, L, Francis, M, Fraser, A, Freeman, A, Galvin, A, Garcia-Casado, M, Gedny, A, Girgis, S, Glover, J, Goncalves, S, Goodwin, S, Gould, O, Gourtovaia, M, Gray, A, Gray, E, Griffiths, C, Gu, Y, Guerin, F, Hamilton, W, Hanks, H, Harrison, E, Harrott, A, Harry, E, Harvison, J, Heath, P, Hernandez-Koutoucheva, A, Hobbs, R, Holland, D, Holmes, S, Hornett, G, Hough, N, Huckle, L, Hughes-Hallet, L, Hunter, A, Inglis, S, Iqbal, S, Jackson, A, Jackson, D, James, K, Jamrozy, D, Verdejo, CJ, Jones, M, Kallepally, K, Kane, L, Kay, K, Kay, S, Keatley, J, Keith, A, King, A, Kitchin, L, Kleanthous, M, Klimekova, M, Korlevic, P, Krasheninnkova, K, Lane, G, Langford, C, Laverack, A, Law, K, Lawniczak, M, Lensing, S, Leonard, S, Letchford, L, Lewis, K, Lewis-Wade, A, Liddle, J, Lin, Q, Lindsay, S, Linsdell, S, Livett, R, Lo, S, Long, R, Lovell, J, Ludden, C, Mack, J, Maddison, M, Makunin, A, Mamun, I, Mansfield, J, Marriott, N, Martin, M, Mayho, M, McCarthy, S, McClintock, J, McGuigan, S, McHugh, S, McMinn, L, Meadows, C, Mobley, E, Moll, R, Morra, M, Morrow, L, Murie, K, Nash, S, Nathwani, C, Naydenova, P, Neaverson, A, Nelson, R, Nerou, E, Nicholson, J, Nimz, T, Noell, GG, O’Meara, S, Ohan, V, Oliver, K, Olney, C, Ormond, D, Oszlanczi, A, Palmer, S, Pang, YF, Pardubska, B, Park, N, Parmar, A, Patel, G, Patel, M, Payne, M, Peacock, S, Petersen, A, Plowman, D, Preston, T, Prestwood, L, Puethe, C, Quail, M, Rajan, D, Rajatileka, S, Rance, R, Rawlings, S, Redshaw, N, Reynolds, J, Reynolds, M, Rice, S, Richardson, M, Roberts, C, Robinson, K, Robinson, M, Robinson, D, Rogers, H, Rojo, EM, Roopra, D, Rose, M, Rudd, L, Sadri, R, Salmon, N, Saul, D, Scott, C, Seekings, P, Shirley, L, Simms, A, Sivadasan, S, Siwek, B, Sizer, D, Skeldon, K, 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The evolution of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus leads to new variants that warrant timely epidemiological characterization. Here we use the dense genomic surveillance data generated by the COVID-19 Genomics UK

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a9942c17abc60289ca896b8a872ae428
https://eprints.whiterose.ac.uk/182254/1/s41586-021-04069-y.pdf

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Autor: Sambles CM; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.; School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL, UK., Salmon DL; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Florance H; SynthSys, Roger Land Building, Alexander Crum Brown Road, The King's Buildings, Edinburgh EH9 3FF, UK., Howard TP; School of Biology, Devonshire Building, Newcastle University, Newcastle upon, Tyne NE1 7RU, UK., Smirnoff N; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Nielsen LR; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., McKinney LV; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., Kjær ED; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., Buggs RJA; Royal Botanic Gardens Kew, Richmond, Surrey TW9 3AB, UK.; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Studholme DJ; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Grant M; School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL, UK.

Publikováno v: Scientific data [Sci Data] 2017 Dec 19; Vol. 4, pp. 170190. Date of Electronic Publication: 2017 Dec 19.

Genome sequence and genetic diversity of European ash trees.

Autor: Sollars ES; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; QIAGEN Aarhus A/S, Silkeborgvej 2, Prismet, 8000 Aarhus C., Denmark., Harper AL; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Kelly LJ; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Sambles CM; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Ramirez-Gonzalez RH; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Swarbreck D; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Kaithakottil G; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Cooper ED; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Uauy C; John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK., Havlickova L; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Worswick G; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; Teagasc, Agriculture and Food Development Authority, Ashtown, Dublin D15 KN3K, Ireland., Studholme DJ; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Zohren J; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Salmon DL; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Clavijo BJ; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Li Y; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., He Z; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Fellgett A; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., McKinney LV; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Nielsen LR; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Douglas GC; Teagasc, Agriculture and Food Development Authority, Ashtown, Dublin D15 KN3K, Ireland., Kjær ED; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Downie JA; John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK., Boshier D; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK., Lee S; Forest Research, Northern Research Station, Roslin, Midlothian EH25 9SY, UK., Clark J; Earth Trust, Little Wittenham, Abingdon, Oxfordshire OX14 4QZ, UK., Grant M; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Bancroft I; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Caccamo M; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.; National Institute of Agricultural Botany, Cambridge CB3 0LE, UK., Buggs RJ; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; Royal Botanic Gardens Kew, Richmond, Surrey TW9 3AB, UK.

Publikováno v: Nature [Nature] 2017 Jan 12; Vol. 541 (7636), pp. 212-216. Date of Electronic Publication: 2016 Dec 26.

Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli.

Autor: Wagley S; Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, EX4 4QD, UK. S.Wagley@exeter.ac.uk., Newcombe J; Faculty of Health and Medical Sciences, School of Biosciences and Medicine, University of Surrey, Guildford, Surrey, GU2 7XH, UK. j.newcombe@surrey.ac.uk., Laing E; Faculty of Health and Medical Sciences, School of Biosciences and Medicine, University of Surrey, Guildford, Surrey, GU2 7XH, UK. e.laing@surrey.ac.uk., Yusuf E; Faculty of Health and Medical Sciences, School of Biosciences and Medicine, University of Surrey, Guildford, Surrey, GU2 7XH, UK. emmanuel.yusuf@yahoo.co.uk., Sambles CM; Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, EX4 4QD, UK. C.M.Sambles@exeter.ac.uk., Studholme DJ; Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, EX4 4QD, UK. D.J.Studholme@exeter.ac.uk., La Ragione RM; Faculty of Health and Medical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, Surrey, GU2 7XH, UK. r.laragione@surrey.ac.uk.; Department of Bacteriology, Animal Health and Veterinary Laboratories Agency, Weybridge, Surrey, KT15 3NB, UK. r.laragione@surrey.ac.uk., Titball RW; Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, EX4 4QD, UK. R.W.Titball@exeter.ac.uk., Champion OL; Biosciences, College of Life and Environmental Sciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, EX4 4QD, UK. O.L.Champion@exeter.ac.uk.

Publikováno v: BMC microbiology [BMC Microbiol] 2014 Oct 28; Vol. 14, pp. 262. Date of Electronic Publication: 2014 Oct 28.