SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

Autor: Eales, O, Page, AJ, de Oliveira Martins, L, Wang, H, Bodinier, B, Haw, D, Jonnerby, J, Atchison, C, Robson, SC, Connor, TR, Loman, NJ, Golubchik, T, Nunez, RTM, Bonsall, D, Rambaut, A, Snell, LB, Livett, R, Ludden, C, Corden, S, Nastouli, E, Nebbia, G, Johnston, I, Lythgoe, K, Torok, ME, Goodfellow, IG, Prieto, JA, Saeed, K, Jackson, DK, Houlihan, C, Frampton, D, Hamilton, WL, Witney, AA, Bucca, G, Pope, CF, Moore, C, Thomson, EC, Harrison, EM, Smith, CP, Rogan, F, Beckwith, SM, Murray, A, Singleton, D, Eastick, K, Sheridan, LA, Randell, P, Jackson, LM, Ariani, CV, Gonçalves, S, Fairley, DJ, Loose, MW, Watkins, J, Moses, S, Nicholls, S, Bull, M, Amato, R, Smith, DL, Aanensen, DM, Barrett, JC, Aggarwal, D, Shepherd, JG, Curran, MD, Parmar, S, Parker, MD, Williams, C, Glaysher, S, Underwood, AP, Bashton, M, Pacchiarini, N, Loveson, KF, Byott, M, Carabelli, AM, Templeton, KE, de Silva, TI, Wang, D, Langford, CF, Sillitoe, J, Gunson, RN, Cottrell, S, O’Grady, J, Kwiatkowski, D, Lillie, PJ, Cortes, N, Moore, N, Thomas, C, Burns, PJ, Mahungu, TW, Liggett, S, Beckett, AH, Holden, MTG, Levett, LJ, Osman, H, Hassan-Ibrahim, MO, Simpson, DA, Chand, M, Gupta, RK, Darby, AC, Paterson, S, Pybus, OG, Volz, EM, de Angelis, D, Robertson, DL, Martincorena, I, Aigrain, L, Bassett, AR, Wong, N, Taha, Y, Erkiert, MJ, Chapman, MHS, Dewar, R, McHugh, MP, Mookerjee, S, Aplin, S, Harvey, M, Sass, T, Umpleby, H, Wheeler, H, McKenna, JP, Warne, B, Taylor, JF, Chaudhry, Y, Izuagbe, R, Jahun, AS, Young, GR, McMurray, C, McCann, CM, Nelson, A, Elliott, S, Lowe, H, Price, A, Crown, MR, Rey, S, Roy, S, Temperton, B, Shaaban, S, Hesketh, AR, Laing, KG, Monahan, IM, Heaney, J, Pelosi, E, Silviera, S, Wilson-Davies, E, Fryer, H, Adams, H, du Plessis, L, Johnson, R, Harvey, WT, Hughes, J, Orton, RJ, Spurgin, LG, Bourgeois, Y, Ruis, C, O’Toole, Á, Gourtovaia, M, Sanderson, T, Fraser, C, Edgeworth, J, Breuer, J, Michell, SL, Todd, JA, John, M, Buck, D, Gajee, K, Kay, GL, Peacock, SJ, Heyburn, D, Kitchman, K, McNally, A, Pritchard, DT, Dervisevic, S, Muir, P, Robinson, E, Vipond, BB, Ramadan, NA, Jeanes, C, Weldon, D, Catalan, J, Jones, N, da Silva Filipe, A, Fuchs, M, Miskelly, J, Jeffries, AR, Oliver, K, Park, NR, Ash, A, Koshy, C, Barrow, M, Buchan, SL, Mantzouratou, A, Clark, G, Holmes, CW, Campbell, S, Davis, T, Tan, NK, Brown, JR, Harris, KA, Kidd, SP, Grant, PR, Xu-McCrae, L, Cox, A, Madona, P, Pond, M, Randell, PA, Withell, KT, Graham, C, Denton-Smith, R, Swindells, E, Turnbull, R, Sloan, TJ, Bosworth, A, Hutchings, S, Pymont, HM, Casey, A, Ratcliffe, L, Jones, CR, Knight, BA, Haque, T, Hart, J, Irish-Tavares, D, Witele, E, Mower, C, Watson, LK, Collins, J, Eltringham, G, Crudgington, D, Macklin, B, Iturriza-Gomara, M, Lucaci, AO, McClure, PC, Carlile, M, Holmes, N, Storey, N, Rooke, S, Yebra, G, Craine, N, Perry, M, Alikhan, N - F, Bridgett, S, Cook, KF, Fearn, C, Goudarzi, S, Lyons, RA, Williams, T, Haldenby, ST, Durham, J, Leonard, S, Davies, RM, Batra, R, Blane, B, Spyer, MJ, Smith, P, Yavus, M, Williams, RJ, Mahanama, AIK, Samaraweera, B, Girgis, ST, Hansford, SE, Green, A, Beaver, C, Bellis, KL, Dorman, MJ, Kay, S, Prestwood, L, Rajatileka, S, Quick, J, Poplawski, R, Reynolds, N, Mack, A, Morriss, A, Whalley, T, Patel, B, Georgana, I, Hosmillo, M, Pinckert, ML, Stockton, J, Henderson, JH, Hollis, A, Stanley, W, Yew, WC, Myers, R, Thornton, A, Adams, A, Annett, T, Asad, H, Birchley, A, Coombes, J, Evans, JM, Fina, L, Gatica-Wilcox, B, Gilbert, L, Graham, L, Hey, J, Hilvers, E, Jones, S, Jones, H, Kumziene-Summerhayes, S, McKerr, C, Powell, J, Pugh, G, Taylor, S, Trotter, AJ, Williams, CA, Kermack, LM, Foulkes, BH, Gallis, M, Hornsby, HR, Louka, SF, Pohare, M, Wolverson, P, Zhang, P, MacIntyre-Cockett, G, Trebes, A, Moll, RJ, Ferguson, L, Goldstein, EJ, Maclean, A, Tomb, R, Starinskij, I, Thomson, L, Southgate, J, Kraemer, MUG, Raghwani, J, Zarebski, AE, Boyd, O, Geidelberg, L, Illingworth, CJ, Jackson, C, Pascall, D, Vattipally, S, Freeman, TM, Hsu, SN, Lindsey, BB, James, K, Lewis, K, Tonkin-Hill, G, Tovar-Corona, JM, Cox, MG, Abudahab, K, Menegazzo, M, MEng, BEWT, Yeats, CA, Mukaddas, A, Wright, DW, Colquhoun, R, Hill, V, Jackson, B, McCrone, JT, Medd, N, Scher, E, Keatley, J - P, Curran, T, Morgan, S, Maxwell, P, Smith, K, Eldirdiri, S, Kenyon, A, Holmes, AH, Price, JR, Wyatt, T, Mather, AE, Skvortsov, T, Hartley, JA, Guest, M, Kitchen, C, Merrick, I, Munn, R, Bertolusso, B, Lynch, J, Vernet, G, Kirk, S, Wastnedge, E, Stanley, R, Idle, G, Bradley, DT, Poyner, J, Mori, M, Jones, O, Wright, V, Brooks, E, Churcher, CM, Fragakis, M, Galai, K, Jermy, A, Judges, S, McManus, GM, Smith, KS, Westwick, E, Attwood, SW, Bolt, F, Davies, A, De Lacy, E, Downing, F, Edwards, S, Meadows, L, Jeremiah, S, Smith, N, Foulser, L, Charalampous, T, Patel, A, Berry, L, Boswell, T, Fleming, VM, Howson-Wells, HC, Joseph, A, Khakh, M, Lister, MM, Bird, PW, Fallon, K, Helmer, T, McMurray, CL, Odedra, M, Shaw, J, Tang, JW, Willford, NJ, Blakey, V, Raviprakash, V, Sheriff, N, Williams, L - A, Feltwell, T, Bedford, L, Cargill, JS, Hughes, W, Moore, J, Stonehouse, S, Atkinson, L, Lee, JCD, Shah, D, Alcolea-Medina, A, Ohemeng-Kumi, N, Ramble, J, Sehmi, J, Williams, R, Chatterton, W, Pusok, M, Everson, W, Castigador, A, Macnaughton, E, Bouzidi, KE, Lampejo, T, Sudhanva, M, Breen, C, Sluga, G, Ahmad, SSY, George, RP, Machin, NW, Binns, D, James, V, Blacow, R, Coupland, L, Smith, L, Barton, E, Padgett, D, Scott, G, Cross, A, Mirfenderesky, M, Greenaway, J, Cole, K, Clarke, P, Duckworth, N, Walsh, S, Bicknell, K, Impey, R, Wyllie, S, Hopes, R, Bishop, C, Chalker, V, Harrison, I, Gifford, L, Molnar, Z, Auckland, C, Evans, C, Johnson, K, Partridge, DG, Raza, M, Baker, P, Bonner, S, Essex, S, Murray, LJ, Lawton, AI, Burton-Fanning, S, Payne, BAI, Waugh, S, Gomes, AN, Kimuli, M, Murray, DR, Ashfield, P, Dobie, D, Ashford, F, Best, A, Crawford, L, Cumley, N, Mayhew, M, Megram, O, Mirza, J, Moles-Garcia, E, Percival, B, Driscoll, M, Ensell, L, Lowe, HL, Maftei, L, Mondani, M, Chaloner, NJ, Cogger, BJ, Easton, LJ, Huckson, H, Lewis, J, Lowdon, S, Malone, CS, Munemo, F, Mutingwende, M, Nicodemi, R, Podplomyk, O, Somassa, T, Beggs, A, Richter, A, Cormie, C, Dias, J, Forrest, S, Higginson, EE, Maes, M, Young, J, Davidson, RK, Jackson, KA, Turtle, L, Keeley, AJ, Ball, J, Byaruhanga, T, Chappell, JG, Dey, J, Hill, JD, Park, EJ, Fanaie, A, Hilson, RA, Yaze, G, Lo, S, Afifi, S, Beer, R, Maksimovic, J, McCluggage, K, Spellman, K, Bresner, C, Fuller, W, Marchbank, A, Workman, T, Shelest, E, Debebe, J, Sang, F, Zamudio, ME, Francois, S, Gutierrez, B, Vasylyeva, TI, Flaviani, F, Ragonnet-Cronin, M, Smollett, KL, Broos, A, Mair, D, Nichols, J, Nomikou, K, Tong, L, Tsatsani, I, O’Brien, PS, Rushton, S, Sanderson, R, Perkins, J, Cotton, S, Gallagher, A, Allara, E, Pearson, C, Bibby, D, Dabrera, G, Ellaby, N, Gallagher, E, Hubb, J, Lackenby, A, Lee, D, Manesis, N, Mbisa, T, Platt, S, Twohig, KA, Morgan, M, Aydin, A, Baker, DJ, Foster-Nyarko, E, Prosolek, SJ, Rudder, S, Baxter, C, Carvalho, SF, Lavin, D, Mariappan, A, Radulescu, C, Singh, A, Tang, M, Morcrette, H, Bayzid, N, Cotic, M, Balcazar, CE, Gallagher, MD, Maloney, D, Stanton, TD, Williamson, KA, Manley, R, Michelsen, ML, Sambles, CM, Studholme, DJ, Warwick-Dugdale, J, Eccles, R, Gemmell, M, Gregory, R, Hughes, M, Nelson, C, Rainbow, L, Vamos, EE, Webster, HJ, Whitehead, M, Wierzbicki, C, Angyal, A, Green, LR, Whiteley, M, Betteridge, E, Bronner, IF, Farr, BW, Goodwin, S, Lensing, SV, McCarthy, SA, Quail, MA, Rajan, D, Redshaw, NM, Scott, C, Shirley, L, Thurston, SAJ, Rowe, W, Gaskin, A, Le-Viet, T, Bonfield, J, Liddle, J, Whitwham, A, Ashby, D, Barclay, W, Taylor, G, Cooke, G, Ward, H, Darzi, A, Riley, S, Chadeau-Hyam, M, Donnelly, CA, Elliott, P, The COVID-19 Genomics UK (COG-UK) Consortium

Publikováno v: 1471-233
BMC infectious diseases

Background Since the emergence of SARS-CoV-2, evolutionary pressure has driven large increases in the transmissibility of the virus. However, with increasing levels of immunity through vaccination and natural infection the evolutionary pressure will

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30139e4e840bd988c0b91755bedc8f1d
http://hdl.handle.net/10044/1/98322

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis.

Autor: Boland, Devon J.^1,2 (AUTHOR), Cornejo-Corona, Ivette¹ (AUTHOR), Browne, Daniel R.^1,3 (AUTHOR), Murphy, Rebecca L.^1,4 (AUTHOR), Mullet, John¹ (AUTHOR), Okada, Shigeru⁵ (AUTHOR), Devarenne, Timothy P.¹ (AUTHOR) tpd8@tamu.edu

Publikováno v: PLoS ONE. 7/29/2024, Vol. 19 Issue 7, p1-31. 31p.

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Autor: Sambles CM; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.; School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL, UK., Salmon DL; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Florance H; SynthSys, Roger Land Building, Alexander Crum Brown Road, The King's Buildings, Edinburgh EH9 3FF, UK., Howard TP; School of Biology, Devonshire Building, Newcastle University, Newcastle upon, Tyne NE1 7RU, UK., Smirnoff N; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Nielsen LR; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., McKinney LV; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., Kjær ED; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, Frederiksberg C 1958, Denmark., Buggs RJA; Royal Botanic Gardens Kew, Richmond, Surrey TW9 3AB, UK.; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Studholme DJ; Biosciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter EX4 4QD, UK., Grant M; School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL, UK.

Publikováno v: Scientific data [Sci Data] 2017 Dec 19; Vol. 4, pp. 170190. Date of Electronic Publication: 2017 Dec 19.

Genome sequence and genetic diversity of European ash trees.

Autor: Sollars ES; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; QIAGEN Aarhus A/S, Silkeborgvej 2, Prismet, 8000 Aarhus C., Denmark., Harper AL; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Kelly LJ; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Sambles CM; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Ramirez-Gonzalez RH; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Swarbreck D; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Kaithakottil G; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Cooper ED; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Uauy C; John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK., Havlickova L; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Worswick G; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; Teagasc, Agriculture and Food Development Authority, Ashtown, Dublin D15 KN3K, Ireland., Studholme DJ; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Zohren J; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK., Salmon DL; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Clavijo BJ; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK., Li Y; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., He Z; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Fellgett A; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., McKinney LV; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Nielsen LR; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Douglas GC; Teagasc, Agriculture and Food Development Authority, Ashtown, Dublin D15 KN3K, Ireland., Kjær ED; Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark., Downie JA; John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK., Boshier D; Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, UK., Lee S; Forest Research, Northern Research Station, Roslin, Midlothian EH25 9SY, UK., Clark J; Earth Trust, Little Wittenham, Abingdon, Oxfordshire OX14 4QZ, UK., Grant M; Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK., Bancroft I; Centre for Novel Agricultural Products, University of York, Heslington, York YO10 5DD, UK., Caccamo M; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.; National Institute of Agricultural Botany, Cambridge CB3 0LE, UK., Buggs RJ; School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.; Royal Botanic Gardens Kew, Richmond, Surrey TW9 3AB, UK.

Publikováno v: Nature [Nature] 2017 Jan 12; Vol. 541 (7636), pp. 212-216. Date of Electronic Publication: 2016 Dec 26.

Characterising the gut microbiome of stranded harbour seals (Phoca vitulina) in rehabilitation.

Autor: Rubio-Garcia, Ana^1,2 (AUTHOR) a.rubiogarcia@uu.nl, Zomer, Aldert L.² (AUTHOR), Guo, Ruoshui² (AUTHOR), Rossen, John W. A.^3,4,5 (AUTHOR), van Zeijl, Jan H.⁶ (AUTHOR), Wagenaar, Jaap A.^2,7 (AUTHOR), Luiken, Roosmarijn E. C.² (AUTHOR)

Publikováno v: PLoS ONE. 12/5/2023, Vol. 18 Issue 12, p1-19. 19p.