Zobrazeno 1 - 10
of 113
pro vyhledávání: '"Samanta, Manoj"'
Plastid genomes (plastomes) of angiosperms are of great interest among biologists. High-throughput sequencing is making many such genomes accessible, increasing the need for tools to perform rapid comparative analysis. This exploratory analysis inves
Externí odkaz:
http://arxiv.org/abs/2310.19110
Autor:
Gvozdjak, Anne, Samanta, Manoj P.
Here we investigate translational regulation in bacteria by analyzing the distribution of start codons in fully assembled genomes. We report 36 genes (infC, rpoC, rnpA, etc.) showing a preference for non-AUG start codons in evolutionarily diverse phy
Externí odkaz:
http://arxiv.org/abs/2008.10758
Autor:
Samanta, Manoj Pratim
Publikováno v:
Systemix Reports 1, Feb 18, 2007
This work analyzed genome-wide nucleotide distribution patterns in ten insect genomes. Two internal measures were applied: (i) GC variation and (ii) third codon nucleotide preference. Although the genome size and overall GC level did not show any cor
Externí odkaz:
http://arxiv.org/abs/q-bio/0702036
Autor:
Samanta, Manoj Pratim
Publikováno v:
Systemix Reports 2, Feb. 18 (2007)
Among all insect genomes, honeybee displays one of the most unusual patterns with interspersed long AT and GC-rich segments. Nearly 75% of the protein-coding genes are located in the AT-rich segments of the genome, but the biological significance of
Externí odkaz:
http://arxiv.org/abs/q-bio/0702037
Autor:
Chin, Chen-Shan, Samanta, Manoj Pratim
In this paper, we study the large-scale protein interaction network of yeast uti lizing a stochastic method based upon percolation of random graphs. In order to find the global features of connectivities in the network, we introduce numeric al measur
Externí odkaz:
http://arxiv.org/abs/cond-mat/0303473
Autor:
Samanta, Manoj Pratim, Liang, Shoudan
Understanding functional associations among genes discovered in sequencing projects is a key issue in post-genomic biology. However, reliable interpretation of the protein interaction data has been difficult. In this work, we show that if two protein
Externí odkaz:
http://arxiv.org/abs/physics/0303027
Autor:
Stolc, Viktor, Samanta, Manoj Pratim, Tongprasit, Waraporn, Sethi, Himanshu, Liang, Shoudan, Nelson, David C., Hegeman, Adrian, Nelson, Clark, Rancour, David, Bednarek, Sebastian, Ulrich, Eldon L., Zhao, Qin, Wrobel, Russell L., Newman, Craig S., Fox, Brian G., Phillips,, George N., Markley, John L., Sussman, Michael R., Altman, Sidney
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2005 Mar . 102(12), 4453-4458.
Externí odkaz:
https://www.jstor.org/stable/3375003
Autor:
Stolc, Viktor, Samanta, Manoj Pratim, Tongprasit, Waraporn, Marshall, Wallace F., Altman, Sidney
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2005 Mar 01. 102(10), 3703-3707.
Externí odkaz:
https://www.jstor.org/stable/3374799
Autor:
Bertone, Paul, Stolc, Viktor, Royce, Thomas E., Rozowsky, Joel S., Urban, Alexander E., Zhu, Xiaowei, Rinn, John L., Tongprasit, Waraporn, Samanta, Manoj, Weissman, Sherman, Gerstein, Mark, Snyder, Michael
Publikováno v:
Science, 2004 Dec . 306(5705), 2242-2246.
Externí odkaz:
https://www.jstor.org/stable/3839885
Autor:
Samanta, Manoj Pratim, Liang, Shoudan
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2003 Oct . 100(22), 12579-12583.
Externí odkaz:
https://www.jstor.org/stable/3148002