Zobrazeno 1 - 10
of 1 340
pro vyhledávání: '"Sali Andrej"'
tttrlib: modular software for integrating fluorescence spectroscopy, imaging, and molecular modeling
Autor:
Peulen, Thomas-Otavio, Hemmen, Katherina, Greife, Annemarie, Webb, Benjamin M., Felekyan, Suren, Sali, Andrej, Seidel, Claus A. M., Sanabria, Hugo, Heinze, Katrin G.
We introduce software for reading, writing and processing fluorescence single-molecule and image spectroscopy data and developing analysis pipelines that unifies various spectroscopic analysis tools. Our software can be used for processing multiple e
Externí odkaz:
http://arxiv.org/abs/2402.17252
Autor:
Singh, Digvijay, Soni, Neelesh, Hutchings, Joshua, Echeverria, Ignacia, Shaikh, Farhaz, Duquette, Madeleine, Suslov, Sergey, Li, Zhixun, van Eeuwen, Trevor, Molloy, Kelly, Shi, Yi, Wang, Junjie, Guo, Qiang, Chait, Brian T., Fernandez-Martinez, Javier, Rout, Michael P., Sali, Andrej, Villa, Elizabeth
Publikováno v:
In Cell 19 September 2024 187(19):5267-5281
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods
Autor:
Vallat, Brinda, Webb, Benjamin M., Westbrook, John D., Goddard, Thomas D., Hanke, Christian A., Graziadei, Andrea, Peisach, Ezra, Zalevsky, Arthur, Sagendorf, Jared, Tangmunarunkit, Hongsuda, Voinea, Serban, Sekharan, Monica, Yu, Jian, Bonvin, Alexander A.M.J.J., DiMaio, Frank, Hummer, Gerhard, Meiler, Jens, Tajkhorshid, Emad, Ferrin, Thomas E., Lawson, Catherine L., Leitner, Alexander, Rappsilber, Juri, Seidel, Claus A.M., Jeffries, Cy M., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, Velankar, Sameer, Schwede, Torsten, Trewhella, Jill, Kesselman, Carl, Berman, Helen M., Sali, Andrej
Publikováno v:
In Journal of Molecular Biology 1 September 2024 436(17)
Autor:
Dopazo Joaquín, Pieper Ursula, Al-Shahrour Fátima, Davis Fred P, Rossi Andrea, Marti-Renom Marc A, Sali Andrej
Publikováno v:
BMC Bioinformatics, Vol 8, Iss Suppl 4, p S4 (2007)
Abstract Background Advances in structural biology, including structural genomics, have resulted in a rapid increase in the number of experimentally determined protein structures. However, about half of the structures deposited by the structural geno
Externí odkaz:
https://doaj.org/article/1a3de79e61af4f9d94469a63377b7511
Autor:
Leitner, Alexander, Bonvin, Alexandre M. J. J., Borchers, Christoph H., Chalkley, Robert J., Chamot-Rooke, Julia, Combe, Colin W., Cox, Jürgen, Dong, Meng-Qiu, Fischer, Lutz, Götze, Michael, Gozzo, Fabio C., Heck, Albert J. R., Hoopmann, Michael R., Huang, Lan, Ishihama, Yasushi, Jones, Andrew R., Kalisman, Nir, Kohlbacher, Oliver, Mechtler, Karl, Moritz, Robert L., Netz, Eugen, Novak, Petr, Petrotchenko, Evgeniy, Sali, Andrej, Scheltema, Richard A., Schmidt, Carla, Schriemer, David, Sinz, Andrea, Sobott, Frank, Stengel, Florian, Thalassinos, Konstantinos, Urlaub, Henning, Viner, Rosa, Vizcaino, Juan A., Wilkins, Marc R., Rappsilber, Juri
Crosslinking mass spectrometry (Crosslinking MS) has substantially matured as a method over the last two decades through parallel development in multiple labs, demonstrating its applicability for protein structure determination, conformation analysis
Externí odkaz:
http://arxiv.org/abs/2007.00383
Autor:
Sali Andrej, Avilés Francesc X, Querol Enrique, Eswar Narayanan, Espadaler Jordi, Marti-Renom Marc A, Oliva Baldomero
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 249 (2008)
Abstract Background A number of studies have used protein interaction data alone for protein function prediction. Here, we introduce a computational approach for annotation of enzymes, based on the observation that similar protein sequences are more
Externí odkaz:
https://doaj.org/article/6406342311464131a69c1accfae43b05
Autor:
Akey, Christopher W., Echeverria, Ignacia, Ouch, Christna, Nudelman, Ilona, Shi, Yi, Wang, Junjie, Chait, Brian T., Sali, Andrej, Fernandez-Martinez, Javier, Rout, Michael P.
Publikováno v:
In Molecular Cell 21 September 2023 83(18):3283-3302
Autor:
Vallat, Brinda, Tauriello, Gerardo, Bienert, Stefan, Haas, Juergen, Webb, Benjamin M., Žídek, Augustin, Zheng, Wei, Peisach, Ezra, Piehl, Dennis W., Anischanka, Ivan, Sillitoe, Ian, Tolchard, James, Varadi, Mihaly, Baker, David, Orengo, Christine, Zhang, Yang, Hoch, Jeffrey C., Kurisu, Genji, Patwardhan, Ardan, Velankar, Sameer, Burley, Stephen K., Sali, Andrej, Schwede, Torsten, Berman, Helen M., Westbrook, John D.
Publikováno v:
In Journal of Molecular Biology 15 July 2023 435(14)
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Autor:
Raveh, Barak, Sun, Liping, White, Kate L., Sanyal, Tanmoy, Tempkin, Jeremy, Zheng, Dongqing, Bharath, Kala, Singla, Jitin, Wang, Chenxi, Zhao, Jihui, Li, Angdi, Graham, Nicholas A., Kesselman, Carl, Stevens, Raymond C., Sali, Andrej
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2021 Aug . 118(35), 1-12.
Externí odkaz:
https://www.jstor.org/stable/27075284