Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Saichao Pan"'
Autor:
Yun Xia, Douyue Li, Tingyi Chen, Saichao Pan, Hanrou Huang, Wenxiang Zhang, Yulin Liang, Yongzhuo Fu, Zhuli Peng, Hongxi Zhang, Liang Zhang, Shan Peng, Ruixue Shi, Xingxin He, Siqian Zhou, Weili Jiao, Xiangyan Zhao, Xiaolong Wu, Lan Zhou, Jingyu Zhou, Qingjian Ouyang, You Tian, Xiaoping Jiang, Yi Zhou, Shiying Tang, Junxiong Shen, Kazusato Ohshima, Zhongyang Tan
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Background Microsatellites are increasingly realized to have biological significance in human genome and health in past decades, the assembled complete reference sequence of human genome T2T-CHM13 brought great help for a comprehensive study
Externí odkaz:
https://doaj.org/article/be412340bfdd4135a283c48066ee8cb7
Autor:
Douyue Li, Saichao Pan, Hongxi Zhang, Yongzhuo Fu, Zhuli Peng, Liang Zhang, Shan Peng, Fei Xu, Hanrou Huang, Ruixue Shi, Heping Zheng, Yousong Peng, Zhongyang Tan
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
Abstract Background Though interest in human simple sequence repeats (SSRs) is increasing, little is known about the exact distributional features of numerous SSRs in human Y-DNA at chromosomal level. Herein, totally 540 maps were established, which
Externí odkaz:
https://doaj.org/article/47d546b67f72442089274967180bc714
Autor:
Hongxi Zhang, Douyue Li, Xiangyan Zhao, Saichao Pan, Xiaolong Wu, Shan Peng, Hanrou Huang, Ruixue Shi, Zhongyang Tan
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-14 (2020)
Abstract Background The ubiquitous presence of short tandem repeats (STRs) in virtually all genomes implicates their functional relevance, while a widely-accepted definition of STR is yet to be established. Previous studies majorly focus on relativel
Externí odkaz:
https://doaj.org/article/ba94f3ec663f40ad8988a27f536a081d
Autor:
Zhuli Peng, Hongxi Zhang, Fei Xu, Yongzhuo Fu, Zhongyang Tan, Shan Peng, Hanrou Huang, Ruixue Shi, Douyue Li, Yousong Peng, Liang Zhang, Saichao Pan, Heping Zheng
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
BMC Genomics
BMC Genomics
Background Though interest in human simple sequence repeats (SSRs) is increasing, little is known about the exact distributional features of numerous SSRs in human Y-DNA at chromosomal level. Herein, totally 540 maps were established, which could cle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4793075743bfa400857b45777edbe703
https://doaj.org/article/47d546b67f72442089274967180bc714
https://doaj.org/article/47d546b67f72442089274967180bc714
Autor:
Yun Xia, Hanrou Huang, Yulin Liang, Douyue Li, Tingyi Chen, Ruixue Shi, Saichao Pan, Fei Xu, Shaoliang Peng, Zhongyang Tan
We systematically built more than 100,000 microsatellites landscape-maps with identifying 3,433 and 5,306 high density microsatellites accumulation (HDMA) peaks in the human reference genome (GRCh38, p13 version) and the first complete human genome (
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::924c73f982375649b805ed7c4ccc5132
https://doi.org/10.1101/2022.04.16.487617
https://doi.org/10.1101/2022.04.16.487617
Autor:
Xiangyan Zhao, Douyue Li, Ruixue Shi, Hongxi Zhang, Xiaolong Wu, Saichao Pan, Hanrou Huang, Shan Peng, Zhongyang Tan
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-14 (2020)
BMC Genomics
BMC Genomics
Background The ubiquitous presence of short tandem repeats (STRs) in virtually all genomes implicates their functional relevance, while a widely-accepted definition of STR is yet to be established. Previous studies majorly focus on relatively longer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7829bc5ccb00eba8384d65a02de9edb
http://link.springer.com/article/10.1186/s12864-020-06949-5
http://link.springer.com/article/10.1186/s12864-020-06949-5
Autor:
Douyue Li, Zhongyang Tan, Hanrou Huang, Shan Peng, Hongxi Zhang, Yuling Liang, Ruixue Shi, Saichao Pan
Publikováno v:
Biochemical and biophysical research communications. 565
Lots of viral genomes were found to contain microsatellites (SSRs) including Ebolavirus, and majority of Ebolavirus microsatellite sites are distributed in protein-coding regions of the genomes. Here, we totally identified 212 reserved microsatellite
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::114551bffef271a279d915fbfa0ad26e
https://pubmed.ncbi.nlm.nih.gov/34098315
https://pubmed.ncbi.nlm.nih.gov/34098315
Autor:
Douyue Li, Saichao Pan, Hongxi Zhang, Yongzhuo Fu, Zhuli Peng, Zhang, Liang, Peng, Shan, Xu, Fei, Hanrou Huang, Ruixue Shi, Heping Zheng, Yousong Peng, Zhongyang Tan
Additional file 6: Figure S1. 540 SSR position related D1-relative density maps in human Y-DNA (NC_000024.10) at 1 kilobase resolution.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7b88baf927dfcf136e3d7af312067db7
Autor:
Douyue Li, Ruixue Shi, Shan Peng, Hongxi Zhang, Hanrou Huang, Xiaolong Wu, Zhongyang Tan, Saichao Pan, Xiangyan Zhao
Simple sequence repeats (SSRs) are found ubiquitously in almost all genome, and their formation mechanism is ambiguous yet. Here, the SSRs were analyzed in 55 randomly selected segments of genomes from a fairly wide range of species, with introducing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::524070b14df8b051d5f2ec973f68baec
https://doi.org/10.21203/rs.3.rs-22488/v1
https://doi.org/10.21203/rs.3.rs-22488/v1
Publikováno v:
Biochemical and Biophysical Research Communications
Microsatellites (SSRs) are ubiquitous in coding and non-coding regions of the Ebolavirus genomes. We synthetically analyzed the microsatellites in whole-genome and terminal regions of 219 Ebolavirus genomes from five species. The Ebolavirus sequences
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8e87f827df36f713e0793f36687ad31
https://pubmed.ncbi.nlm.nih.gov/31078274
https://pubmed.ncbi.nlm.nih.gov/31078274