Essential guidelines for computational method benchmarking

Autor: Weber, Lukas M., Saelens, Wouter, Cannoodt, Robrecht, Soneson, Charlotte, Hapfelmeier, Alexander, Gardner, Paul P., Boulesteix, Anne-Laure, Saeys, Yvan, Robinson, Mark D.

In computational biology and other sciences, researchers are frequently faced with a choice between several computational methods for performing data analyses. Benchmarking studies aim to rigorously compare the performance of different methods using

Externí odkaz: http://arxiv.org/abs/1812.00661

CD8 memory precursor cell generation is a continuous process

Autor: Todorov, Helena, Prieux, Margaux, Laubreton, Daphne, Bouvier, Matteo, Wang, Shaoying, de Bernard, Simon, Arpin, Christophe, Cannoodt, Robrecht, Saelens, Wouter, Bonnaffoux, Arnaud, Gandrillon, Olivier, Crauste, Fabien, Saeys, Yvan, Marvel, Jacqueline

Publikováno v: In iScience 16 September 2022 25(9)

Recent advances in trajectory inference from single-cell omics data

Autor: Deconinck, Louise, Cannoodt, Robrecht, Saelens, Wouter, Deplancke, Bart, Saeys, Yvan

Publikováno v: In Current Opinion in Systems Biology September 2021 27

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Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Autor: Li, Hongjie, Janssens, Jasper, De Waegeneer, Maxime, Kolluru, Sai Saroja, Davie, Kristofer, Gardeux, Vincent, Saelens, Wouter, David, Fabrice P. A., Brbić, Maria, Spanier, Katina, Leskovec, Jure, McLaughlin, Colleen N., Xie, Qijing, Jones, Robert C., Brueckner, Katja, Shim, Jiwon, Tattikota, Sudhir Gopal, Schnorrer, Frank, Rust, Katja, Nystul, Todd G., Carvalho-Santos, Zita, Ribeiro, Carlos, Pal, Soumitra, Mahadevaraju, Sharvani, Przytycka, Teresa M., Allen, Aaron M., Goodwin, Stephen F., Berry, Cameron W., Fuller, Margaret T., White-Cooper, Helen, Matunis, Erika L., DiNardo, Stephen, Galenza, Anthony, O’Brien, Lucy Erin, Dow, Julian A. T., Jasper, Heinrich, Oliver, Brian, Perrimon, Norbert, Deplancke, Bart, Quake, Stephen R., Luo, Liqun, Aerts, Stein, Agarwal, Devika, Ahmed-Braimah, Yasir, Arbeitman, Michelle, Ariss, Majd M., Augsburger, Jordan, Ayush, Kumar, Baker, Catherine C., Banisch, Torsten, Birker, Katja, Bodmer, Rolf, Bolival, Benjamin, Brantley, Susanna E., Brill, Julie A., Brown, Nora C., Buehner, Norene A., Cai, Xiaoyu Tracy, Cardoso-Figueiredo, Rita, Casares, Fernando, Chang, Amy, Clandinin, Thomas R., Crasta, Sheela, Desplan, Claude, Detweiler, Angela M., Dhakan, Darshan B., Donà, Erika, Engert, Stefanie, Floc’hlay, Swann, George, Nancy, González-Segarra, Amanda J., Groves, Andrew K., Gumbin, Samantha, Guo, Yanmeng, Harris, Devon E., Heifetz, Yael, Holtz, Stephen L., Horns, Felix, Hudry, Bruno, Hung, Ruei-Jiun, Jan, Yuh Nung, Jaszczak, Jacob S., Jefferis, Gregory S. X. E., Karkanias, Jim, Karr, Timothy L., Katheder, Nadja Sandra, Kezos, James, Kim, Anna A., Kim, Seung K., Kockel, Lutz, Konstantinides, Nikolaos, Kornberg, Thomas B., Krause, Henry M., Labott, Andrew Thomas, Laturney, Meghan, Lehmann, Ruth, Leinwand, Sarah, Li, Jiefu, Li, Joshua Shing Shun, Li, Kai, Li, Ke, Li, Liying, Li, Tun, Litovchenko, Maria, Liu, Han-Hsuan, Liu, Yifang, Lu, Tzu-Chiao, Manning, Jonathan, Mase, Anjeli, Matera-Vatnick, Mikaela, Matias, Neuza Reis, McDonough-Goldstein, Caitlin E., McGeever, Aaron, McLachlan, Alex D., Moreno-Roman, Paola, Neff, Norma, Neville, Megan, Ngo, Sang, Nielsen, Tanja, O’Brien, Caitlin E., Osumi-Sutherland, David, Özel, Mehmet Neset, Papatheodorou, Irene, Petkovic, Maja, Pilgrim, Clare, Pisco, Angela Oliveira, Reisenman, Carolina, Sanders, Erin Nicole, dos Santos, Gilberto, Scott, Kristin, Sherlekar, Aparna, Shiu, Philip, Sims, David, Sit, Rene V., Slaidina, Maija, Smith, Harold E., Sterne, Gabriella, Su, Yu-Han, Sutton, Daniel, Tamayo, Marco, Tan, Michelle, Tastekin, Ibrahim, Treiber, Christoph, Vacek, David, Vogler, Georg, Waddell, Scott, Wang, Wanpeng, Wilson, Rachel I., Wolfner, Mariana F., Wong, Yiu-Cheung E., Xie, Anthony, Xu, Jun, Yamamoto, Shinya, Yan, Jia, Yao, Zepeng, Yoda, Kazuki, Zhu, Ruijun, Zinzen, Robert P.

Publikováno v: Science
Science, 2022, 375 (6584), ⟨10.1126/science.abk2432⟩

FCA Consortium: Stein Aerts, Devika Agarwal, Yasir Ahmed-Braimah, Aaron M. Allen, Michelle Arbeitman, Majd M. Ariss, Jordan Augsburger, Kumar Ayush, Catherine C. Baker, Torsten Banisch, Cameron W. Berry, Katja Birker, Rolf Bodmer, Benjamin Bolival, S

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a252c44381f3aea4b5303ba386c6b0e5
https://cnrs.hal.science/hal-03795698/file/FCA_paper_MainTextV2.pdf