Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Sachet Shukla"'
Autor:
Amin H. Nassar, Sarah Abou Alaiwi, Sylvan C. Baca, Elio Adib, Rosario I. Corona, Ji-Heui Seo, Marcos A. S. Fonseca, Sandor Spisak, Talal El Zarif, Viktoria Tisza, David A. Braun, Heng Du, Monica He, Abdallah Flaifel, Michel Alchoueiry, Thomas Denize, Sayed G. Matar, Andres Acosta, Sachet Shukla, Yue Hou, John Steinharter, Gabrielle Bouchard, Jacob E. Berchuck, Edward O’Connor, Connor Bell, Pier Vitale Nuzzo, Gwo-Shu Mary Lee, Sabina Signoretti, Michelle S. Hirsch, Mark Pomerantz, Elizabeth Henske, Alexander Gusev, Kate Lawrenson, Toni K. Choueiri, David J. Kwiatkowski, Matthew L. Freedman
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
The epigenomic landscape of renal cell carcinoma (RCC) remains to be explored. Here, integrative epigenomic analysis of primary human RCC samples and RCC GWAS risk SNPs identifies transcription-factor specific subtypes and enrichment of risk variants
Externí odkaz:
https://doaj.org/article/5c45bbe4ef1e4b0b9d9d760011ce2040
Autor:
Zachary T. Weber, Katharine A. Collier, David Tallman, Juliet Forman, Sachet Shukla, Sarah Asad, Justin Rhoades, Samuel Freeman, Heather A. Parsons, Nicole O. Williams, Romualdo Barroso-Sousa, Elizabeth H. Stover, Haider Mahdi, Carrie Cibulskis, Niall J. Lennon, Gavin Ha, Viktor A. Adalsteinsson, Sara M. Tolaney, Daniel G. Stover
Publikováno v:
Genome Medicine, Vol 13, Iss 1, Pp 1-17 (2021)
Abstract Background Circulating tumor DNA (ctDNA) offers minimally invasive means to repeatedly interrogate tumor genomes, providing opportunities to monitor clonal dynamics induced by metastasis and therapeutic selective pressures. In metastatic can
Externí odkaz:
https://doaj.org/article/c88b661c2dd14e5595a5247ba01a0bfe
Autor:
Ulrike Peters, Shuji Ogino, Antoni Ribas, Charles S. Fuchs, Thomas J. Hudson, Levi A. Garraway, Eric S. Lander, Stacey B. Gabriel, Jesse M. Zaretsky, Syed H. Zaidi, Ming Yu, Catherine J. Wu, David A. Wheeler, Alexander Upfill-Brown, Jennifer Tsoi, Wei Sun, Janet L. Stanford, Sachet Shukla, Brian Shirts, Eve Shinbrot, Daniel Sanghoon Shin, Stephen J. Salipante, Ben J. Raphael, Elleanor H. Quist, Cristina Puig-Saus, Colin C. Pritchard, Matteo Pellegrini, Brian B. Nadel, Dennis J. Montoya, Mark D.M. Leiserson, Paige Krystofinski, Yeon Joo Kim, Jeroen R. Huyghe, Siwen Hu-Lieskovan, Li Hsu, William M. Grady, Milan S. Geybels, Helena Escuin-Ordinas, Charles Connolly, Gabriel Abril-Rodriguez, Katsuhiko Nosho, Teppei Morikawa, Kentaro Inamura, Zhi Rong Qian, Reiko Nishihara, Jonathan A. Nowak, Michael Quist, Xinmeng Jasmine Mu, Tsuyoshi Hamada, Daniel K. Wells, Marios Giannakis, Catherine S. Grasso
Supplementary Table S22: Segmented b-allele deficits
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f85c6b21dd37edcedbb7dc8339aa114
https://doi.org/10.1158/2159-8290.22532705.v1
https://doi.org/10.1158/2159-8290.22532705.v1
Autor:
Ulrike Peters, Shuji Ogino, Antoni Ribas, Charles S. Fuchs, Thomas J. Hudson, Levi A. Garraway, Eric S. Lander, Stacey B. Gabriel, Jesse M. Zaretsky, Syed H. Zaidi, Ming Yu, Catherine J. Wu, David A. Wheeler, Alexander Upfill-Brown, Jennifer Tsoi, Wei Sun, Janet L. Stanford, Sachet Shukla, Brian Shirts, Eve Shinbrot, Daniel Sanghoon Shin, Stephen J. Salipante, Ben J. Raphael, Elleanor H. Quist, Cristina Puig-Saus, Colin C. Pritchard, Matteo Pellegrini, Brian B. Nadel, Dennis J. Montoya, Mark D.M. Leiserson, Paige Krystofinski, Yeon Joo Kim, Jeroen R. Huyghe, Siwen Hu-Lieskovan, Li Hsu, William M. Grady, Milan S. Geybels, Helena Escuin-Ordinas, Charles Connolly, Gabriel Abril-Rodriguez, Katsuhiko Nosho, Teppei Morikawa, Kentaro Inamura, Zhi Rong Qian, Reiko Nishihara, Jonathan A. Nowak, Michael Quist, Xinmeng Jasmine Mu, Tsuyoshi Hamada, Daniel K. Wells, Marios Giannakis, Catherine S. Grasso
Supplementary Tables S16-S19, describing IHC results on NHS/HPFS data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b1f658c2bd29f543bac0c8d0d803d6d
https://doi.org/10.1158/2159-8290.22532696
https://doi.org/10.1158/2159-8290.22532696
Supp. Tables S1, S3-S15, S20, and S23 from Genetic Mechanisms of Immune Evasion in Colorectal Cancer
Autor:
Ulrike Peters, Shuji Ogino, Antoni Ribas, Charles S. Fuchs, Thomas J. Hudson, Levi A. Garraway, Eric S. Lander, Stacey B. Gabriel, Jesse M. Zaretsky, Syed H. Zaidi, Ming Yu, Catherine J. Wu, David A. Wheeler, Alexander Upfill-Brown, Jennifer Tsoi, Wei Sun, Janet L. Stanford, Sachet Shukla, Brian Shirts, Eve Shinbrot, Daniel Sanghoon Shin, Stephen J. Salipante, Ben J. Raphael, Elleanor H. Quist, Cristina Puig-Saus, Colin C. Pritchard, Matteo Pellegrini, Brian B. Nadel, Dennis J. Montoya, Mark D.M. Leiserson, Paige Krystofinski, Yeon Joo Kim, Jeroen R. Huyghe, Siwen Hu-Lieskovan, Li Hsu, William M. Grady, Milan S. Geybels, Helena Escuin-Ordinas, Charles Connolly, Gabriel Abril-Rodriguez, Katsuhiko Nosho, Teppei Morikawa, Kentaro Inamura, Zhi Rong Qian, Reiko Nishihara, Jonathan A. Nowak, Michael Quist, Xinmeng Jasmine Mu, Tsuyoshi Hamada, Daniel K. Wells, Marios Giannakis, Catherine S. Grasso
Supplementary Tables S1, S3 through S15, S20, and S23
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b228f7c2b68ba5acea19d7ed0d9d3b7d
https://doi.org/10.1158/2159-8290.22532702.v1
https://doi.org/10.1158/2159-8290.22532702.v1
Autor:
Ulrike Peters, Shuji Ogino, Antoni Ribas, Charles S. Fuchs, Thomas J. Hudson, Levi A. Garraway, Eric S. Lander, Stacey B. Gabriel, Jesse M. Zaretsky, Syed H. Zaidi, Ming Yu, Catherine J. Wu, David A. Wheeler, Alexander Upfill-Brown, Jennifer Tsoi, Wei Sun, Janet L. Stanford, Sachet Shukla, Brian Shirts, Eve Shinbrot, Daniel Sanghoon Shin, Stephen J. Salipante, Ben J. Raphael, Elleanor H. Quist, Cristina Puig-Saus, Colin C. Pritchard, Matteo Pellegrini, Brian B. Nadel, Dennis J. Montoya, Mark D.M. Leiserson, Paige Krystofinski, Yeon Joo Kim, Jeroen R. Huyghe, Siwen Hu-Lieskovan, Li Hsu, William M. Grady, Milan S. Geybels, Helena Escuin-Ordinas, Charles Connolly, Gabriel Abril-Rodriguez, Katsuhiko Nosho, Teppei Morikawa, Kentaro Inamura, Zhi Rong Qian, Reiko Nishihara, Jonathan A. Nowak, Michael Quist, Xinmeng Jasmine Mu, Tsuyoshi Hamada, Daniel K. Wells, Marios Giannakis, Catherine S. Grasso
To understand the genetic drivers of immune recognition and evasion in colorectal cancer, we analyzed 1,211 colorectal cancer primary tumor samples, including 179 classified as microsatellite instability–high (MSI-high). This set includes The Cance
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31631a44c2cd18477c853619e7e25189
https://doi.org/10.1158/2159-8290.c.6546803
https://doi.org/10.1158/2159-8290.c.6546803
Autor:
Bo Li, Yang-Xin Fu, Catherine J. Wu, Hao Chen, Xiaowei Zhan, Jian Qiao, Sachet Shukla, Jianfeng Ye, Jiahui Chen, Jian Zhang, Longchao Liu, Hongyi Zhang
Three common HLA alleles predicted by NetMHC with strong binding affinities to a HSFX1 derived 9-mer peptide (HSFX1: 384-392).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b394e672af836afaab9bbdc46a06acfa
https://doi.org/10.1158/1078-0432.22479555.v1
https://doi.org/10.1158/1078-0432.22479555.v1
Autor:
Bo Li, Yang-Xin Fu, Catherine J. Wu, Hao Chen, Xiaowei Zhan, Jian Qiao, Sachet Shukla, Jianfeng Ye, Jiahui Chen, Jian Zhang, Longchao Liu, Hongyi Zhang
Figure S1-13. Figure S1. Performance evaluation for iSMART, TCRdist and GLIPH. Figure S2. Cluster antigen-specificity analysis for iSMART, TCRdist and GLIPH. Figure S3. Summary of iSMART identified CDR3 clusters. Figure S4. Clustered CDR3s as an indi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3cec3ac791d1d11dfccec897ef4ca8f3
https://doi.org/10.1158/1078-0432.22479564.v1
https://doi.org/10.1158/1078-0432.22479564.v1
Autor:
Bo Li, Yang-Xin Fu, Catherine J. Wu, Hao Chen, Xiaowei Zhan, Jian Qiao, Sachet Shukla, Jianfeng Ye, Jiahui Chen, Jian Zhang, Longchao Liu, Hongyi Zhang
TCR clusters obtained from the most abundant clonotypes of 666 HCMV cohort.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b085d95ccaceb7c2b2e71690867a8513
https://doi.org/10.1158/1078-0432.22479570.v1
https://doi.org/10.1158/1078-0432.22479570.v1
Autor:
Bo Li, Yang-Xin Fu, Catherine J. Wu, Hao Chen, Xiaowei Zhan, Jian Qiao, Sachet Shukla, Jianfeng Ye, Jiahui Chen, Jian Zhang, Longchao Liu, Hongyi Zhang
Purpose:Cancer antigen–specific T cells are key components in antitumor immune response, yet their identification in the tumor microenvironment remains challenging, as most cancer antigens are unknown. Recent advance in immunology suggests that sim
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5631c87ac16cdaba1039a639e5db8786
https://doi.org/10.1158/1078-0432.c.6530241.v1
https://doi.org/10.1158/1078-0432.c.6530241.v1