Benchmarking long-read aligners and SV callers for structural variation detection in Oxford nanopore sequencing data.

Autor: Helal, Asmaa A.¹ (AUTHOR), Saad, Bishoy T.¹ (AUTHOR) bishoyth@hitssolutions.com, Saad, Mina T.¹ (AUTHOR), Mosaad, Gamal S.¹ (AUTHOR), Aboshanab, Khaled M.² (AUTHOR) aboshanab2012@pharma.asu.edu.eg

Publikováno v: Scientific Reports. 3/14/2024, Vol. 14 Issue 1, p1-22. 22p.

Genomic characterization, in vitro, and preclinical evaluation of two microencapsulated lytic phages VB_ST_E15 and VB_ST_SPNIS2 against clinical multidrug-resistant Salmonella serovars.

Autor: Youssef, Reem A., Sakr, Masarra M., Shebl, Rania I., Saad, Bishoy T., Aboshanab, Khaled M.

Publikováno v: Annals of Clinical Microbiology & Antimicrobials; 2/15/2024, Vol. 23 Issue 1, p1-17, 17p

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Exploring the Nature of the Antimicrobial Metabolites Produced by Paenibacillus ehimensis Soil Isolate MZ921932 Using a Metagenomic Nanopore Sequencing Coupled with LC-Mass Analysis.

Autor: Eltokhy MA; Department of Microbiology, Faculty of Pharmacy, Misr International University (MIU), Cairo 19648, Egypt., Saad BT; Department of Bioinformatics, HITS Solutions Co., Cairo 11765, Egypt., Eltayeb WN; Department of Microbiology, Faculty of Pharmacy, Misr International University (MIU), Cairo 19648, Egypt., Yahia IS; Laboratory of Nano-Smart Materials for Science and Technology (LNSMST), Department of Physics, Faculty of Science, King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia.; Research Center for Advanced Materials Science (RCAMS), King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia.; Nanoscience Laboratory for Environmental and Biomedical Applications (NLEBA), Semiconductor Lab., Department of Physics, Faculty of Education, Ain Shams University, Roxy, Cairo 11757, Egypt., Aboshanab KM; Department of Microbiology and Immunology, Faculty of Pharmacy, Ain Shams University, Organization of African Unity Str., Cairo 11566, Egypt., Ashour MSE; Department of Microbiology and Immunology, Faculty of Pharmacy, Al-Azhar University, Cairo 11651, Egypt.

Publikováno v: Antibiotics (Basel, Switzerland) [Antibiotics (Basel)] 2021 Dec 22; Vol. 11 (1). Date of Electronic Publication: 2021 Dec 22.