Cloning and nucleotide sequence of the gene coding for the major 25-kilodalton outer membrane protein of Brucella abortus

Autor: P Lintermans, Axel Cloeckaert, J N Limet, P de Wergifosse

Publikováno v: Journal of Bacteriology
Journal of Bacteriology, American Society for Microbiology, 1995, 177 (7), pp.1911-1914

The cloning and sequencing of the Brucella abortus major 25-kDa outer membrane protein (OMP) is reported. The 25-kDa (group 3) OMP has been proposed, on the basis of amino acid composition, to be the counterpart of OmpA (D. R. Verstraete, M. T. Creas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c98e983f78f0c315b950f30c2574f3f
https://doi.org/10.1128/jb.177.7.1911-1914.1995

Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores

Autor: Olivier Bastien, Eric Maréchal

Publikováno v: BMC Bioinformatics
BMC Bioinformatics, 2008, 9 (1), pp.332. ⟨10.1186/1471-2105-9-332⟩
BMC Bioinformatics 1 (9), 332. (2008)
BMC Bioinformatics, BioMed Central, 2008, 9, pp.332. ⟨10.1186/1471-2105-9-332⟩
BMC Bioinformatics, BioMed Central, 2008, 9 (1), pp.332. ⟨10.1186/1471-2105-9-332⟩
BMC Bioinformatics, Vol 9, Iss 1, p 332 (2008)

Background Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic data. Two statistical models have been proposed. In the asymptotic limit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74bbb09b827ffa87468211dc4250922f
https://hal.science/hal-00319281

A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities

Autor: Maréchal Eric, Ortet Philippe, Roy Sylvaine, Bastien Olivier

Publikováno v: BMC Bioinformatics (6), 49. (2005)
BMC Bioinformatics
BMC Bioinformatics, 2005, 6, pp.49. ⟨10.1186/1471-2105-6-49⟩
BMC Bioinformatics, BioMed Central, 2005, 6, pp.49. ⟨10.1186/1471-2105-6-49⟩
BMC Bioinformatics, Vol 6, Iss 1, p 49 (2005)

Background Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topology. We have sought a representation of homologous proteins that would

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::2855d6c3ca2d7c7462b5505c66fa447d
http://prodinra.inra.fr/record/76814

Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics

Autor: Olivier Bastien, Eric Maréchal, Jean-Christophe Aude, Sylvaine Roy

Publikováno v: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2004, 20 (4), pp.534-537. ⟨10.1093/bioinformatics/btg440⟩
Bioinformatics, 2004, 20 (4), pp.534-537. ⟨10.1093/bioinformatics/btg440⟩

Motivation:Different automatic methods of sequence alignments are routinely used as a starting point for homology searches and function inference. Confidence in an alignment probability is one of the major fundamentals of massive automatic genome-sca

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6118d6ef352d8b66e341afc609cfa3b1
https://hal.inrae.fr/hal-02681680

Partial nucleotide sequence and chromosomal localization of a bovine zinc finger gene ZNF164

Autor: Laurence Pibouin, C. Le Chalony, Gérard Goubin, Bernard Dutrillaux, H. Hayes, Françoise Apiou

Publikováno v: Cytogenetics and Cell Genetics
Cytogenetics and Cell Genetics, S Karger AG, 1995, 70, pp.192-194

A clone carrying an open reading frame coding for a novel zinc finger protein of the Krüppel family was isolated from a bovine genomic library and designated ZNF164 (zinc finger protein 164). Partial sequencing revealed that it contained at least 13

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97a2affff56e2a5025b59c98cefde51b
https://doi.org/10.1159/000134031