Zobrazeno 1 - 10
of 1 023
pro vyhledávání: '"SBML"'
Publikováno v:
Journal of Integrative Bioinformatics, Vol 21, Iss 1, Pp 524-31 (2024)
We describe a web-based tool, MakeSBML (https://sys-bio.github.io/makesbml/), that provides an installation-free application for creating, editing, and searching the Biomodels repository for SBML-based models. MakeSBML is a client-based web applicati
Externí odkaz:
https://doaj.org/article/d3755ccf88c14fee85023b9c54c5c842
Publikováno v:
Journal of Integrative Bioinformatics, Vol 21, Iss 1, Pp 524-31 (2024)
Julia is a general purpose programming language that was designed for simplifying and accelerating numerical analysis and computational science. In particular the Scientific Machine Learning (SciML) ecosystem of Julia packages includes frameworks for
Externí odkaz:
https://doaj.org/article/6ae0cf3ace624c3f97687bbf28d30f80
Publikováno v:
PeerJ, Vol 12, p e16726 (2024)
Systems Biology Markup Language (SBML) has emerged as a standard for representing biological models, facilitating model sharing and interoperability. It stores many types of data and complex relationships, complicating data management and analysis. T
Externí odkaz:
https://doaj.org/article/eecdd89b61f54d61bfd0182586b96ba4
Publikováno v:
Infection Prevention in Practice, Vol 5, Iss 4, Pp 100308- (2023)
Summary: Background: High Consequence Infectious Diseases (HCIDs), have the potential to cause pandemics and require particular focus for preparedness due to their high mortality rates. The application of Personal Protective Equipment (PPE) for HCIDs
Externí odkaz:
https://doaj.org/article/a3eab40cdb4a4847ae33bd6efd0c7f6a
Publikováno v:
AI, Vol 4, Iss 1, Pp 303-318 (2023)
In this paper, a computational framework is proposed that merges mechanistic modeling with deep neural networks obeying the Systems Biology Markup Language (SBML) standard. Over the last 20 years, the systems biology community has developed a large n
Externí odkaz:
https://doaj.org/article/91893d6259ff4857a5c3514bab50c581
Publikováno v:
Applied Network Science, Vol 7, Iss 1, Pp 1-23 (2022)
Abstract Modelling complex biological systems is necessary for their study and understanding. Biomodels is a repository of peer-reviewed models represented in the Systems Biology Markup Language (SBML). Most of these models are quantitative, but in s
Externí odkaz:
https://doaj.org/article/8946ddc099ec4f9db520106c651e1ed9
Autor:
Pedro Mendes
Publikováno v:
Frontiers in Cell and Developmental Biology, Vol 11 (2023)
The issue of reproducibility of computational models and the related FAIR principles (findable, accessible, interoperable, and reusable) are examined in a specific test case. I analyze a computational model of the segment polarity network in Drosophi
Externí odkaz:
https://doaj.org/article/4db14c233e1941cf8831fd397c312df5
Autor:
Cemal Erdem, Marc R. Birtwistle
Publikováno v:
Frontiers in Systems Biology, Vol 3 (2023)
Computational models that can explain and predict complex sub-cellular, cellular, and tissue-level drug response mechanisms could speed drug discovery and prioritize patient-specific treatments (i.e., precision medicine). Some models are mechanistic
Externí odkaz:
https://doaj.org/article/0eb3242213f34b2d8b513d0519be6bb7
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Publikováno v:
Advances in Simulation, Vol 6, Iss 1, Pp 1-10 (2021)
Abstract Background Simulation-based mastery learning (SBML) is an effective, evidence-based methodology for procedural skill acquisition, but its application may be limited by its resource intensive nature. To address this issue, an enhanced SBML pr
Externí odkaz:
https://doaj.org/article/4a85a0e747b64c4b96444dd721cb1549