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Publikováno v:
Journal of Chemical Information and Computer Sciences. 44:1251-1256
The advent of digital computers has made the routine use of pattern-matching possible in various applications. This has also stimulated the development of many algorithms. In this paper, we propose a new algorithm that offers improved performance com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aab3f0c2e27a165e7e401f8c3bb40ad2
https://doi.org/10.1021/ci030463z
https://doi.org/10.1021/ci030463z
Publikováno v:
Protein & Peptide Letters. 14:669-671
The Ramachandran plot displays the main chain conformation angles (Phi and Psi) of the polypeptide chain of a protein molecule. The paper reports the updated version of the Ramachandran plot web server and has several improved options for displaying
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6d5f858707b9d0934fb35c023308d75
https://doi.org/10.2174/092986607781483912
https://doi.org/10.2174/092986607781483912
Autor:
B. Balamurugan, C. Mayilarasi, M. Jeyasimhan, Kanagaraj Sekar, J. Ramesh, S. S. Sheik, K. Samaya Mohan
Publikováno v:
Acta Crystallographica Section D Biological Crystallography. 61:637-639
The Conformation Angles Data Base (CADB) is a comprehensive, authoritative and timely knowledge base with a powerful query engine developed to facilitate the retrieval of information related to the conformational angles (main chain and side chain) of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44b78b596aad4306158b985c9062ac76
https://doi.org/10.1107/s0907444905005871
https://doi.org/10.1107/s0907444905005871
Publikováno v:
Nucleic Acids Research. 31:3356-3358
SEM, Symmetry Equivalent Molecules, is a web-based graphical user interface to generate and visualize the symmetry equivalent molecules (proteins and nucleic acids). In addition, the program allows the users to save the three-dimensional atomic coord
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9af4866e3c8d772e32fab6c9f8c7078c
https://doi.org/10.1093/nar/gkg587
https://doi.org/10.1093/nar/gkg587
Publikováno v:
Protein and peptide letters. 14(7)
Transitions in amino-acid conformation angles tend to accompany various structural modifications in protein structures. Thus, to benefit the modeling of protein structures, the Conformation Angles DataBase (CADB-3.0) has been updated to visualize the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84e2f48810d8118d3a9034676f1d5ea2
https://pubmed.ncbi.nlm.nih.gov/17897091
https://pubmed.ncbi.nlm.nih.gov/17897091
Publikováno v:
Nucleic acids research. 31(1)
Conformation Angles DataBase (CADB) provides an online resource to access data on conformation angles (both main-chain and side-chain) of protein structures in two data sets corresponding to 25% and 90% sequence identity between any two proteins, ava
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa6d969d4e25a673622f20a04092f87a
https://pubmed.ncbi.nlm.nih.gov/12520049
https://pubmed.ncbi.nlm.nih.gov/12520049
Publikováno v:
Bioinformatics (Oxford, England). 18(11)
Summary: A graphics package has been developed to display the main chain torsion angles phi, psi (φ, Ψ); (Ramachandran angles) in a protein of known structure. In addition, the package calculates the Ramachandran angles at the central residue in th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c869234eb389c04ed16764a8a209383
https://pubmed.ncbi.nlm.nih.gov/12424132
https://pubmed.ncbi.nlm.nih.gov/12424132
Autor:
Kanagaraj Sekar, A. S. Z. Hussain, V. Shanthi, Jeyaraman Jeyakanthan, S. S. Sheik, P. Selvarani
Publikováno v:
Acta crystallographica. Section D, Biological crystallography. 58(Pt 8)
PDB Goodies is a web-based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three-dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three-dimensional atom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::19ac72831aa11af814a40d11d57910c5
https://pubmed.ncbi.nlm.nih.gov/12136164
https://pubmed.ncbi.nlm.nih.gov/12136164
Publikováno v:
Bioinformatics. 19:1043-1044
Summary: A graphics package has been developed to display all side chain conformation angles of the user selected residue in a given protein structure. The proposed package is incorporated with all the protein structures (solved using X-ray diffracti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6bbbf56809aeaf985072c96bdff23438
https://doi.org/10.1093/bioinformatics/btg125
https://doi.org/10.1093/bioinformatics/btg125