Zobrazeno 1 - 10
of 23
pro vyhledávání: '"S. M. Ashiqul Islam"'
Autor:
Venu Thatikonda, S. M. Ashiqul Islam, Robert J. Autry, Barbara C. Jones, Susanne N. Gröbner, Gregor Warsow, Barbara Hutter, Daniel Huebschmann, Stefan Fröhling, Marcel Kool, Mirjam Blattner-Johnson, David T. W. Jones, Ludmil B. Alexandrov, Stefan M. Pfister, Natalie Jäger
Publikováno v:
Nature Cancer. 4:276-289
Analysis of mutational signatures can reveal underlying molecular mechanisms of the processes that have imprinted the somatic mutations found in cancer genomes. Here, we analyze single base substitutions and small insertions and deletions in pediatri
Autor:
Christopher D. Steele, Ammal Abbasi, S. M. Ashiqul Islam, Amy L. Bowes, Azhar Khandekar, Kerstin Haase, Shadi Hames-Fathi, Dolapo Ajayi, Annelien Verfaillie, Pawan Dhami, Alex McLatchie, Matt Lechner, Nicholas Light, Adam Shlien, David Malkin, Andrew Feber, Paula Proszek, Tom Lesluyes, Fredrik Mertens, Adrienne M. Flanagan, Maxime Tarabichi, Peter Van Loo, Ludmil B. Alexandrov, Nischalan Pillay
Publikováno v:
Nature. 606:984-991
Gains and losses of DNA are prevalent in cancer and emerge as a consequence of inter-related processes of replication stress, mitotic errors, spindle multipolarity and breakage–fusion–bridge cycles, among others, which may lead to chromosomal ins
Autor:
S M Ashiqul Islam, Irina I. Abnizova, James McKay, Yudou He, Estelle Chanudet, Behnoush Abedi-Ardekani, Dariush Nasrollahzadeh, Michael Eden, Alisa M. Goldstein, Jon W. Teague, Blandina T. Mmbaga, Nan Hu, Karl Smith-Byrne, Sandra Perdomo, Jingwei Wang, Christine Carreira, Jean-Yves Scoazec, Rebecca C. Fitzgerald, Luis Felipe Ribeiro, Michael R. Stratton, Samad Gharavi, Sergey Senkin, Erik N Bergstrom, Hiva Saffar, Sarah Moody, Sheila Coelho Soares-Lima, Pauline E Bucciarelli, Stefano Serra, Ghislaine Scelo, Charles Dzamalala, Valerie McCormack, Reza Malekzadeh, Hossein Poustchi, Valerie Gaborieau, Lia S Campos, Joshua R. Atkins, Paul Brennan, Emily Thomas, David T. Jones, Paul Richman, Farid Azmoudeh-Ardalan, Masoud Sotoudeh, Ahmadreza Niavarani, Tatsuhiro Shibata, Calli Latimer, Stephen Fitzgerald, Ludmil B Alexandrov, Ricardo Cortez Cardoso Penha, Abdolreza Fazel, Laura Humphreys, Azhar Khandekar, Arash Nikmanesh, Diana Menya
Publikováno v:
Nature Genetics. 53:1553-1563
Esophageal squamous cell carcinoma (ESCC) shows remarkable variation in incidence that is not fully explained by known lifestyle and environmental risk factors. It has been speculated that an unknown exogenous exposure(s) could be responsible. Here w
Autor:
Bin Zhu, Rachel Lokanga, Natalie Saini, Francisco Martínez-Jiménez, Jung Kim, Kevin M. Brown, Laura Mendoza, Kerstin Heselmeyer-Haddad, Andrea Castro, Mengying Li, Amy Hutchinson, Burcak Otlu, Aaron L Moye, Lucia Anna Muscarella, Nathan Cole, Michael Kebede, Neil E. Caporaso, Scott M. Lawrence, Paul Hofman, Dario Consonni, Manuela Costantini, Naser Ansari-Pour, Hannah Carter, Jonas S Almeida, Yohan Bossé, Maria Luana Poeta, Jian Sang, Bonnie E. Gould Rothberg, Mary E. Olanich, Maria Teresa Landi, Philippe Joubert, Jennifer Rosenbaum, Azhar Khandekar, Thomas Ried, Angela Cecilia Pesatori, Qing Lan, Carla F. Kim, Jiyeon Choi, Douglas R. Stewart, Samuel H. Wilson, Dmitry A. Gordenin, Abel Gonzalez-Perez, Tongwu Zhang, Petra Lenz, Montserrat Garcia-Closas, Nuria Lopez-Bigas, David C. Wedge, Daniela Hirsch, Praphulla M S Bhawsar, Matthew B. Schabath, Yves Pommier, Jianxin Shi, Nathaniel Rothman, Ludmil B. Alexandrov, Máire A. Duggan, S M Ashiqul Islam, Iliana Peneva, Stephen J. Chanock, Wei Zhao, Phuc H Hoang, Leszek J. Klimczak
Publikováno v:
Nat Genet
Lung cancer in never smokers (LCINS) is a common cause of cancer mortality but its genomic landscape is poorly characterized. Here high-coverage whole-genome sequencing of 232 LCINS showed 3 subtypes defined by copy number aberrations. The dominant s
Autor:
Zhaoming Wang, J. Robert Michael, Darrell Gentry, Suzanne J. Baker, Jobin Sunny, S M Ashiqul Islam, Clay McLeod, David W. Ellison, Michael A. Dyer, Mark R. Wilkinson, Jinghui Zhang, Ludmil B. Alexandrov, Chaitanya Bangur, Bob Davidson, Singer Ma, Geralyn Miller, Pamella Tater, Yong Cheng, Arthur Chiao, Alexander M. Gout, Tuan Nguyen, James R. Downing, Edgar Sioson, Gang Wu, Delaram Rahbarinia, Ed Suh, Xiaotu Ma, Shaohua Lei, Yutaka Yasui, Andrew Frantz, Kirby Birch, Scott G. Foy, Nedra Robison, Kim E. Nichols, Aman Patel, Richard Daly, Alberto S. Pappo, Naina Thangaraj, Xin Zhou, Leslie L. Robison, Matthew Lear, Vijay Kandali, Christopher P. Meyer, David Finkelstein, Stephanie Wiggins, Tracy Ard, Irina McGuire, Yu Liu, Samuel W. Brady, Gregory T. Armstrong, Liqing Tian, Charles G. Mullighan, Brent A. Orr, Ti-Cheng Chang, Keith Perry, Michael Macias, Shuoguo Wang, Lance E. Palmer, Soheil Meshinchi, Carmen L. Wilson, James McMurry, Andrew Swistak, Michael Rusch, Scott Newman, Leigh Tanner, Madison Treadway, Xing Tang, Omar Serang, Jian Wang, Andrew Thrasher, Rahul Mudunuri, Mitchell J. Weiss, Michael N. Edmonson
Publikováno v:
Cancer Discov
Effective data sharing is key to accelerating research to improve diagnostic precision, treatment efficacy, and long-term survival in pediatric cancer and other childhood catastrophic diseases. We present St. Jude Cloud (https://www.stjude.cloud), a
Publikováno v:
Biotechnology Letters. 42:287-294
Targeted therapies seek to selectively eliminate a pathogen without disrupting the resident microbial community. However, with selectivity comes the potential for developing bacterial resistance. Thus, a diverse range of targeting peptides must be ma
Publikováno v:
Toxins, Vol 10, Iss 6, p 251 (2018)
Cystine-stabilized peptides represent a large family of peptides characterized by high structural stability and bactericidal, fungicidal, or insecticidal properties. Found throughout a wide range of taxa, this broad and functionally important family
Externí odkaz:
https://doaj.org/article/191a0e93ca6f40329ff1bb7fcbffb1ea
Autor:
S M Ashiqul, Islam, Marcos, Díaz-Gay, Yang, Wu, Mark, Barnes, Raviteja, Vangara, Erik N, Bergstrom, Yudou, He, Mike, Vella, Jingwei, Wang, Jon W, Teague, Peter, Clapham, Sarah, Moody, Sergey, Senkin, Yun Rose, Li, Laura, Riva, Tongwu, Zhang, Andreas J, Gruber, Christopher D, Steele, Burçak, Otlu, Azhar, Khandekar, Ammal, Abbasi, Laura, Humphreys, Natalia, Syulyukina, Samuel W, Brady, Boian S, Alexandrov, Nischalan, Pillay, Jinghui, Zhang, David J, Adams, Iñigo, Martincorena, David C, Wedge, Maria Teresa, Landi, Paul, Brennan, Michael R, Stratton, Steven G, Rozen, Ludmil B, Alexandrov
Publikováno v:
Cell genomics. 2(11)
Mutational signature analysis is commonly performed in cancer genomic studies. Here, we present SigProfilerExtractor, an automated tool for
Autor:
Jean-Yves Scoazec, S M Ashiqul Islam, Irina I. Abnizova, Diana Menya, Paul Richman, Dariush Nasrollahzadeh, Michael R. Stratton, Charles Dzamalala, Sergey Senkin, Karl Smith-Byrne, Hiva Saffar, Pauline E Bucciarelli, Christine Carreira, Sarah Moody, Michael Eden, Paul Brennan, Yudou He, Lia S Campos, Azhar Khandekar, Erik N. Bergstrom, Arash Nikmanesh, Abdolreza Fazel, Ghislaine Scelo, Valerie Gaborieau, Farid Azmoudeh-Ardelan, Calli Latimer, Ricardo Cortez Cardoso Penha, Laura Humphreys, Stefano Serra, Jon W. Teague, Tatsuhiro Shibata, Ludmil B. Alexandrov, Estelle Chanudet, Masoud Sotoudeh, Jingwei Wang, Blandina T. Mmbaga, Valerie McCormack, Reza Malekzadeh, Rebecca C. Fitzgerald, Joshua R. Atkins, David T. Jones, Sandra Perdomo, Emily Thomas, Luis Felipe Ribeiro, Alisa M. Goldstein, Stephen Fitzgerald, Behnoush Abedi-Ardekani, James McKay, Nan Hu
Esophageal squamous cell carcinoma (ESCC) shows a remarkable variation in incidence which is not fully explained by known lifestyle and environmental risk factors. It has been speculated that an unknown exogenous exposure(s) could be responsible. Her
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::60e3994892074c80c817477151c576fa
https://doi.org/10.1101/2021.04.29.21255920
https://doi.org/10.1101/2021.04.29.21255920
Autor:
Venu Thatikonda, S M Ashiqul Islam, Robert J Autry, Barbara C Jones, Susanne Gröbner, Gregor Warsow, Barbara Hutter, Daniel Huebschmann, Stefan Fröhling, Mirjam Blattner-Johnson, David T W Jones, Ludmil B Alexandrov, Stefan M, Pfister, Natalie Jäger
Publikováno v:
Neuro-Oncology. 24:i183-i183
Analysis of mutational signatures can reveal the underlying molecular processes that have caused the somatic mutations found in genomes. We performed an extensive analysis encompassing mutational signatures of single base substitution and, for the fi