Atlantic mackerel population structure does not support genetically distinct spawning components [version 1; peer review: 1 approved, 2 approved with reservations]

Autor: Imanol Aguirre-Sarabia, Alice Manuzzi, Dorte Bekkevold, Natalia Díaz-Arce, Jessica Gomez-Garrido, Teunis Jansen, Marta Gut, Tyler S. Alioto, Sonia Sanchez-Maroño, Martin Castonguay, Naiara Rodriguez-Ezpeleta, Paula Álvarez

Publikováno v: Open Research Europe, Vol 4 (2024)

Background The Atlantic mackerel, Scomber scombrus (Linnaeus, 1758) is a commercially valuable migratory pelagic fish inhabiting the northern Atlantic Ocean and the Mediterranean Sea. Given its highly migratory behaviour for feeding and spawning, sev

Externí odkaz: https://doaj.org/article/283a8328c70d4d4fa7f12c4c13f014ac

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

Autor: Marco Gerdol, Rebeca Moreira, Fernando Cruz, Jessica Gómez-Garrido, Anna Vlasova, Umberto Rosani, Paola Venier, Miguel A. Naranjo-Ortiz, Maria Murgarella, Samuele Greco, Pablo Balseiro, André Corvelo, Leonor Frias, Marta Gut, Toni Gabaldón, Alberto Pallavicini, Carlos Canchaya, Beatriz Novoa, Tyler S. Alioto, David Posada, Antonio Figueras

Publikováno v: Genome Biology, Vol 21, Iss 1, Pp 1-21 (2020)

Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically and economically relevant edible marine bivalve, highly invasive and resilient to biotic and abiotic stressors causing recurrent massive mortalities in other bi

Externí odkaz: https://doaj.org/article/0a52a5ad14904cb4b3b6efe6a0a86160

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

Autor: Isabel Almudi, Joel Vizueta, Christopher D. R. Wyatt, Alex de Mendoza, Ferdinand Marlétaz, Panos N. Firbas, Roberto Feuda, Giulio Masiero, Patricia Medina, Ana Alcaina-Caro, Fernando Cruz, Jessica Gómez-Garrido, Marta Gut, Tyler S. Alioto, Carlos Vargas-Chavez, Kristofer Davie, Bernhard Misof, Josefa González, Stein Aerts, Ryan Lister, Jordi Paps, Julio Rozas, Alejandro Sánchez-Gracia, Manuel Irimia, Ignacio Maeso, Fernando Casares

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

Genomic studies of paleopteran insects, such as mayflies, are needed to reconstruct early insect evolution. Here, Almudi and colleagues present the genome of the mayfly Cloeon dipterum and use transcriptomics to characterize its adaptations to distin

Externí odkaz: https://doaj.org/article/c1ed19c7d3394dea8a552561ecaa07b7

How genomics can help biodiversity conservation

Autor: Kathrin Theissinger, Carlos Fernandes, Giulio Formenti, Iliana Bista, Paul R. Berg, Christoph Bleidorn, Aureliano Bombarely, Angelica Crottini, Guido R. Gallo, José A. Godoy, Sissel Jentoft, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María J. Ruiz-López, Simona Secomandi, Hannes Svardal, Constantina Theofanopoulou, Jan de Vries, Ann-Marie Waldvogel, Guojie Zhang, Erich D. Jarvis, Miklós Bálint, Claudio Ciofi, Robert M. Waterhouse, Camila J. Mazzoni, Jacob Höglund, Sargis A. Aghayan, Tyler S. Alioto, Isabel Almudi, Nadir Alvarez, Paulo C. Alves, Isabel R. Amorim do Rosario, Agostinho Antunes, Paula Arribas, Petr Baldrian, Giorgio Bertorelle, Astrid Böhne, Andrea Bonisoli-Alquati, Ljudevit L. Boštjančić, Bastien Boussau, Catherine M. Breton, Elena Buzan, Paula F. Campos, Carlos Carreras, L. FIlipe C. Castro, Luis J. Chueca, Fedor Čiampor, Elena Conti, Robert Cook-Deegan, Daniel Croll, Mónica V. Cunha, Frédéric Delsuc, Alice B. Dennis, Dimitar Dimitrov, Rui Faria, Adrien Favre, Olivier D. Fedrigo, Rosa Fernández, Gentile Francesco Ficetola, Jean-François Flot, Toni Gabaldón, Dolores R. Agius, Alice M. Giani, M. Thomas P. Gilbert, Tine Grebenc, Katerina Guschanski, Romain Guyot, Bernhard Hausdorf, Oliver Hawlitschek, Peter D. Heintzman, Berthold Heinze, Michael Hiller, Martin Husemann, Alessio Iannucci, Iker Irisarri, Kjetill S. Jakobsen, Peter Klinga, Agnieszka Kloch, Claudius F. Kratochwil, Henrik Kusche, Kara K.S. Layton, Jennifer A. Leonard, Emmanuelle Lerat, Gianni Liti, Tereza Manousaki, Tomas Marques-Bonet, Pável Matos-Maraví, Michael Matschiner, Florian Maumus, Ann M. Mc Cartney, Shai Meiri, José Melo-Ferreira, Ximo Mengual, Michael T. Monaghan, Matteo Montagna, Robert W. Mysłajek, Marco T. Neiber, Violaine Nicolas, Marta Novo, Petar Ozretić, Ferran Palero, Lucian Pârvulescu, Marta Pascual, Octávio S. Paulo, Martina Pavlek, Cinta Pegueroles, Loïc Pellissier, Graziano Pesole, Craig R. Primmer, Ana Riesgo, Lukas Rüber, Diego Rubolini, Daniele Salvi, Ole Seehausen, Matthias Seidel, Bruno Studer, Spyros Theodoridis, Marco Thines, Lara Urban, Anti Vasemägi, Adriana Vella, Noel Vella, Sonja C. Vernes, Cristiano Vernesi, David R. Vieites, Christopher W. Wheat, Gert Wörheide, Yannick Wurm, Gabrielle Zammit

Publikováno v: The European Reference Genome Atlas Consortium 2023, ' How genomics can help biodiversity conservation ', Trends in Genetics, vol. 39, no. 7 . https://doi.org/10.1016/j.tig.2023.01.005
Trends in genetics
Trends in genetics, str. , Vol. , iss. , 2023
COBISS-ID: 520937241
Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; Crottini, Angelica; Gallo, Guido R.; Godoy, José A.; Jentoft, Sissel; Malukiewicz, Joanna; Mouton, Alice; Oomen, Rebekah A.; Paez, Sadye; Palsbøll, Per J.; Pampoulie, Christophe; Ruiz-López, María J.; Secomandi, Simona; Svardal, Hannes; ... (2023). How genomics can help biodiversity conservation. Trends in genetics, 39(7), pp. 545-559. Elsevier Current Trends 10.1016/j.tig.2023.01.005
European Reference Genome Atlas (ERGA) Consortium 2023, ' How genomics can help biodiversity conservation ', Trends in Genetics . https://doi.org/10.1016/j.tig.2023.01.005
Trends in Genetics, 39 (7)
Trends in Genetics
Trends in genetics, 2023.

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d017d3941ad247384ff4473b9978be5
https://doi.org/10.5167/uzh-231893

Chromosome-level genome assembly of Lilford’s wall lizard,Podarcis lilfordi(Günther, 1874) from the Balearic Islands (Spain)

Autor: Jessica Gomez-Garrido, Fernando Cruz, Tyler S. Alioto, Nathalie Feiner, Tobias Uller, Marta Gut, Ignacio Sanchez Escudero, Giacomo Tavecchia, Andreu Rotger, Katherin Eliana Otalora Acevedo, Laura Baldo

The Mediterranean lizardPodarcis lilfordiis an emblematic species of the Balearic Islands. The extensive phenotypic diversity among extant isolated populations makes the species a great insular model system for eco-evolutionary studies, as well as a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::dabbea3b2179a818e66cbb54b3b41bac
https://doi.org/10.1101/2023.02.15.528647