Zobrazeno 1 - 10
of 397
pro vyhledávání: '"S Seetharam"'
Autor:
Thomas Hartwig, Michael Banf, Gisele Passaia Prietsch, Jia-Ying Zhu, Isabel Mora-Ramírez, Jos H. M. Schippers, Samantha J. Snodgrass, Arun S. Seetharam, Bruno Huettel, Judith M. Kolkman, Jinliang Yang, Julia Engelhorn, Zhi-Yong Wang
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-25 (2023)
Abstract Background Genetic variation in regulatory sequences that alter transcription factor (TF) binding is a major cause of phenotypic diversity. Brassinosteroid is a growth hormone that has major effects on plant phenotypes. Genetic variation in
Externí odkaz:
https://doaj.org/article/80a9b17e31424dfb91089093cd7cfec6
Autor:
Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin, Thomas J. Baum
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-1 (2024)
Externí odkaz:
https://doaj.org/article/7a853e5f1af543528b92fba7bc5cb2e4
Autor:
Alyssa R Phillips, Arun S Seetharam, Patrice S Albert, Taylor AuBuchon-Elder, James A Birchler, Edward S Buckler, Lynn J Gillespie, Matthew B Hufford, Victor Llaca, Maria Cinta Romay, Robert J Soreng, Elizabeth A Kellogg, Jeffrey Ross-Ibarra
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 13, Iss 6 (2023)
Abstract Poa pratensisP. pratensisP. pratensisP. pratensis
Externí odkaz:
https://doaj.org/article/e1b09d0b45c64f629a73ee602eed41b9
Autor:
Wyatt A. Shell, Michael A. Steffen, Hannah K. Pare, Arun S. Seetharam, Andrew J. Severin, Amy L. Toth, Sandra M. Rehan
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-9 (2021)
Shell et al. compare the molecular evolution of bee genomes across species with varying social behaviours. Their findings indicate that eusocial lineages tend to have more gene family expansion than weakly social lineages. Transcriptomic data suggest
Externí odkaz:
https://doaj.org/article/8615583b778e4acca5f9f2ca0f0df1a7
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-11 (2020)
Abstract Background PacBio sequencing is an incredibly valuable third-generation DNA sequencing method due to very long read lengths, ability to detect methylated bases, and its real-time sequencing methodology. Yet, hitherto no tool was available fo
Externí odkaz:
https://doaj.org/article/009f82a3f464409a88d7b3e57533458d
Autor:
Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun S. Seetharam, Joshua C. Stein, Victor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin Fengler, Margaret Woodhouse, Brian P. Walenz, Sergey Koren, Adam M. Phillippy, Brett T. Hannigan, R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, Doreen Ware
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Sequence depth and read length determine the quality of genome assembly. Here, the authors leverage a set of PacBio reads to develop guidelines for sequencing and assembly of complex plant genomes in order to allocate finite resources using maize as
Externí odkaz:
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452
Autor:
Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael, Matthew B. Hufford, R. Kelly Dawe
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Creating gapless telomere-to-telomere assemblies of complex genomes is one of the ultimate challenges in genomics. We use two independent assemblies and an optical map-based merging pipeline to produce a maize genome (B73-Ab10) composed of 6
Externí odkaz:
https://doaj.org/article/a5e8887863d14b13bef268c7f7f78319
Autor:
Nancy Manchanda, John L. Portwood, Margaret R. Woodhouse, Arun S. Seetharam, Carolyn J. Lawrence-Dill, Carson M. Andorf, Matthew B. Hufford
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-9 (2020)
Abstract Background Genome assemblies are foundational for understanding the biology of a species. They provide a physical framework for mapping additional sequences, thereby enabling characterization of, for example, genomic diversity and difference
Externí odkaz:
https://doaj.org/article/9e4eabcbbc544226a9dbe9f4e67ba9b1
Autor:
Nolan Bornowski, Kathryn J. Michel, John P. Hamilton, Shujun Ou, Arun S. Seetharam, Jerry Jenkins, Jane Grimwood, Chris Plott, Shengqiang Shu, Jayson Talag, Megan Kennedy, Hope Hundley, Vasanth R. Singan, Kerrie Barry, Chris Daum, Yuko Yoshinaga, Jeremy Schmutz, Candice N. Hirsch, Matthew B. Hufford, Natalia deLeon, Shawn M. Kaeppler, C. Robin Buell
Publikováno v:
The Plant Genome, Vol 14, Iss 3, Pp n/a-n/a (2021)
Abstract The stiff‐stalk heterotic group in Maize (Zea mays L.) is an important source of inbreds used in U.S. commercial hybrid production. Founder inbreds B14, B37, B73, and, to a lesser extent, B84, are found in the pedigrees of a majority of co
Externí odkaz:
https://doaj.org/article/579f35ac5f934dc5a2375d794f0ae176
Autor:
Arun S. Seetharam, Yunqing Yu, Sébastien Bélanger, Lynn G. Clark, Blake C. Meyers, Elizabeth A. Kellogg, Matthew B. Hufford
Publikováno v:
Frontiers in Plant Science, Vol 12 (2021)
In this work, we sequenced and annotated the genome of Streptochaeta angustifolia, one of two genera in the grass subfamily Anomochlooideae, a lineage sister to all other grasses. The final assembly size is over 99% of the estimated genome size. We f
Externí odkaz:
https://doaj.org/article/84300219255649e5b22693e0815ab99c