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Modular Analysis of Peripheral Blood Gene Expression in Rheumatoid Arthritis Captures Reproducible Gene Expression Changes in Tumor Necrosis Factor Responders

Autor: Marlena Kern, David Chernoff, Cassandra Pond, Michael E. Weinblatt, Michael J. Townsend, Jennifer D. Hamilton, Michaela Oswald, John P. Carulli, Robert M. Townsend, S. Lamberth, Annette Lee, Mark Curran, Peter K. Gregersen

Publikováno v: Arthritis & Rheumatology. 67:344-351

Objective To establish whether the analysis of whole blood gene expression can be useful in predicting or monitoring response to anti-TNF therapy in RA.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7c43c201163e9c445bb40a623c682492
https://doi.org/10.1002/art.38947

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Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies

Autor: Conway C. Huang, Glenn K. Lockwood, Nicholas J. Schork, S. Lamberth, Carrie Brodmerkel, Yauheniya Cherkas, Tristan M. Carland, Wayne Pfeiffer, Kristopher A. Standish, Gunaretnam Rajagopal, Ed Jaeger, Mark Curran, Lance Smith, Mahidhar Tatineni

Publikováno v: BMC Bioinformatics

Motivation Next-generation sequencing (NGS) technologies have become much more efficient, allowing whole human genomes to be sequenced faster and cheaper than ever before. However, processing the raw sequence reads associated with NGS technologies re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34debd57d0505a493b715698aec08be7
https://pubmed.ncbi.nlm.nih.gov/26395405

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

Autor: C. Yordan, Bénédicte Purnelle, Kelsi Scott, S. Bray-Allen, T. Stoneking, Joseph A. Murray, B. McCullagh, A. Düsterhöft, K. Granderath, P. Vos, W. R. McCombie, Rita Aert, M. Feldpausch, Matt Cordes, M. Shekher, Joelle Kalicki, Kymberlie H. Pepin, R. Klein Lankhorst, Barbara Harris, A. Montfort, M. Cotton, J. Zhong, A. Pettett, Dmitrij Frishman, A. Brandt, S. Andrews, E. Holzer, T. Gibbons, Michael W. Bevan, S. Dose, M. Zidanic, M. Lodhi, Elena Casacuberta, D. Borkova, Thomas Pohl, K. McLay, M. Kreis, S. A. Langham, J. Cloud, Anagnostis Argiriou, L. Gnoj, B. Grymonprez, Ellson Y. Chen, K. Habermann, Michael A. Quail, David W. Johnson, M. de Haan, S. Granat, S. Johnson, S Müller-Auer, I'k. Swaby, Lucinda Fulton, C. Bielke, Joerg Hoheisel, H. Wedler, C. Berger, M. van Staveren, C. Gabel, M. Rose, P. Kötter, U. Ramsperger, G. Bothe, K.-D. Entian, N. Miller, H. Hilbert, Wilhelm Ansorge, Guido Volckaert, G. Clabauld, P. Ridley, A. Cronin, John Spieth, A. Hasegawa, K. Schutz, Joanne O. Nelson, David Bentley, S. Stocker, R. Shah, A. Johnson, J. Doggett, E. Ryan, R. Wambutt, A. Herzl, D. Dauner, R. Hiller, M. Weichselgartner, M. de la Bastide, H. Sun, Richard K. Wilson, Patrick Minx, R. Mayes, M. Van Montagu, L. Parnell, R. Preston, Johar Ali, Corinne E. Joshu, S. Aubourg, Marco A. Marra, Cindy Strong, M. Schäfer, A. Berghoff, M. D. Bargues, Rosario Liguori, Klaus F. X. Mayer, Lori Spiegel, J. Gielen, L. Bilham, P. Zaccaria, H. Van den Daele, V De Simone, A.C. Maarse, Ian Bancroft, Dan Layman, J. Hauf, A. Torres, R. De Clercq, R. Mache, Petra Brandt, R. Felber, Michael A. Rieger, K. Kemp, M. Lyne, D. Tacon, S. Till, Nicola Lennard, Leslie A. Grivell, J. Van der Schueren, S. Schnabl, D. Vitale, Hans-Werner Mewes, S. Hall, Nancy Terryn, A Perez-Perez, F. Vandenbussche, Kai Lemcke, S. Hempel, J. Hoffman, P. Ma, E. Piravandi, P. Latreille, Hui Du, Wolfgang Zimmermann, P. Francs, M. Grimm, Sindy Neumann, A. Abbott, Pere Puigdomènech, M. Kay, M. Braeken, A. Mündlein, G. Harmon, Leo Heijnen, W. Schmidt, Marc Boutry, Nadim Shohdy, J. Abu-Threideh, Patrik Scholler, F. Quigley, Marie-Adèle Rajandream, T. Greco, LaDeana W. Hillier, E. Defoor, Steffen Heber, Abdul Hameed, M. Braun, S. Rechmann, Johan Robben, L. Clark, Martin D. Watson, B. Obermaier, A. Matero, Tina Graves, F. Chefdor, B. Antonoiu, A. O'Shaughnessy, Wim G. Dirkse, I. Weltjens, D. Portatelle, Jason B. Kramer, T. H. Löhnert, M. Rodriguez, D. Vil, Robert A. Martienssen, D. Haase, O. Massenet, R. Villarroel, I. Bastiaens, P. Mooijman, N. Weber, Micheline Vandenbol, M. Scharfe, C. Schüller, George Murphy, H. Blöcker, Jane Rogers, Bob Fulton, B. Lamar, Laura Courtney, Willem J. Stiekema, Mike Dante, S. Berneiser, Vladimir Benes, E. Huang, T. Jesse, Neilay Dedhia, E. Bent, Berthold Fartmann, T. Schmidtheini, M. Fuchs, C. Geisel, Mario Müller, K. Jones, A. De Keyser, Manuel Pérez-Alonso, Elaine R. Mardis, Marleen Voet, S. Schwarz, A. Lecharny, Michel Delseny, S. Lamberth, K. Drone, P. Sheet, T. Weitzenegger, M. Sehkon, B. Reichert, Y. J. Chuang, C. Buysshaert, Javier Terol, Sander Peters, R. Cooke, Jennifer Edwards

Publikováno v: ResearcherID
Nature, 402(6763), 769-777. Nature Publishing Group

The higher plant Arabidopsis thaliana (Arabidopsis) is an important model for identifying plant genes and determining their function. To assist biological investigations and to define chromosome structure, a coordinated effort to sequence the Arabido

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::145f50de1b357bacf0559d64a541f04e
https://doi.org/10.1038/47134