Whole-genome sequencing for antimicrobial surveillance: species-specific quality thresholds and data evaluation from the network of the European Union Reference Laboratory for Antimicrobial Resistance genomic proficiency tests of 2021 and 2022.

Autor: Sørensen LH; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark., Pedersen SK; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark., Jensen JD; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark., Lacy-Roberts N; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark., Andrea A; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark., S M Brouwer M; Wageningen Bioveterinary Research part of Wageningen University and Research, Lelystad, the Netherlands., Veldman KT; Wageningen Bioveterinary Research part of Wageningen University and Research, Lelystad, the Netherlands., Lou Y; U.S. Food and Drug Administration, Center for Food and Safety and Applied Nutrition, College Park, Maryland, USA., Hoffmann M; U.S. Food and Drug Administration, Center for Food and Safety and Applied Nutrition, College Park, Maryland, USA., S Hendriksen R; National Food Institute, Technical University of Denmark, Research Group for Global Capacity Building, European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.

Publikováno v: MSystems [mSystems] 2024 Sep 17; Vol. 9 (9), pp. e0016024. Date of Electronic Publication: 2024 Aug 06.