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Akademický článek

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation

Autor: Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia A. S. Haryono, Irina Bessarab, Rohan B. H. Williams, Ulrich Szewzyk

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-19 (2021)

Abstract Background Cylindrospermopsin is a highly persistent cyanobacterial secondary metabolite toxic to humans and other living organisms. Strain OF001 and A210 are manganese-oxidizing bacteria (MOB) able to transform cylindrospermopsin during the

Externí odkaz: https://doaj.org/article/935a54d5d9ba482db8da93d6d5d2cf26

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Akademický článek

Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing

Autor: Krithika Arumugam, Irina Bessarab, Mindia A. S. Haryono, Xianghui Liu, Rogelio E. Zuniga–Montanez, Samarpita Roy, Guanglei Qiu, Daniela I. Drautz–Moses, Ying Yu Law, Stefan Wuertz, Federico M. Lauro, Daniel H. Huson, Rohan B. H. Williams

Publikováno v: npj Biofilms and Microbiomes, Vol 7, Iss 1, Pp 1-13 (2021)

Abstract New long read sequencing technologies offer huge potential for effective recovery of complete, closed genomes from complex microbial communities. Using long read data (ONT MinION) obtained from an ensemble of activated sludge enrichment bior

Externí odkaz: https://doaj.org/article/0e7f1b54b39d45908d7c06e60e12a27c

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Akademický článek

Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling

Autor: Mindia A. S. Haryono, Ying Yu Law, Krithika Arumugam, Larry C. -W. Liew, Thi Quynh Ngoc Nguyen, Daniela I. Drautz-Moses, Stephan C. Schuster, Stefan Wuertz, Rohan B. H. Williams

Publikováno v: Frontiers in Microbiology, Vol 13 (2022)

The analysis of metagenome data based on the recovery of draft genomes (so called metagenome-assembled genomes, or MAG) has assumed an increasingly central role in microbiome research in recent years. Microbial communities underpinning the operation

Externí odkaz: https://doaj.org/article/585bf122f78f4e4699c12288b9211420

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Akademický článek

Comparative Genomics of Members of the Genus Defluviicoccus With Insights Into Their Ecophysiological Importance

Autor: Irina Bessarab, Abdul Majid Maszenan, Mindia A. S. Haryono, Krithika Arumugam, Nay Min Min Thaw Saw, Robert J. Seviour, Rohan B. H. Williams

Publikováno v: Frontiers in Microbiology, Vol 13 (2022)

Members of the genus Defluviicoccus occur often at high abundances in activated sludge wastewater treatment plants designed to remove phosphorus, where biomass is subjected to alternating anaerobic feed/aerobic famine conditions, believed to favor th

Externí odkaz: https://doaj.org/article/65a922d3b5a8486382993aff82e61941

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Using slurry TBM data to assess the variability of weathered Kowloon granite

Autor: J. Nick Shirlaw, Tom O. Henderson, Ivan S. Haryono, Francois Dudouit, David Salisbury

Publikováno v: Quarterly Journal of Engineering Geology and Hydrogeology.

Parallel running tunnels were driven by a 7.46m diameter slurry tunnel boring machine (TBM) through weathered Kowloon granite in Hong Kong for MTR Contract SCL 1103. The final part of the tunnelling was in a full face of Grade III or Grade II rock, u

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::167c0abff7b2c48a6c26aa1193609074
https://doi.org/10.1144/qjegh2022-032

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Recovery and Analysis of Long-Read Metagenome-Assembled Genomes

Autor: Krithika Arumugam, Irina Bessarab, Mindia A. S. Haryono, Rohan B. H. Williams

Publikováno v: Metagenomic Data Analysis ISBN: 9781071630716

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::50a3ac76efb51eeabab3bb9857f20f28
https://doi.org/10.1007/978-1-0716-3072-3_12

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A draft genome of the ascomycotal fungal speciesPseudopithomyces maydicus(familyDidymosphaeriaceae)

Autor: Krithika Arumugam, Sherilyn Ho, Irina Bessarab, Falicia Q. Y. Goh, Mindia A. S. Haryono, Ezequiel Santillan, Stefan Wuertz, Yvonne Chow, Rohan B. H. Williams

We report a draft genome of the ascomycotal fungal species Pseudopithomyces maydicus (isolate name SBW1) obtained using a culture isolate from brewery wastewater. From a 22 contig assembly, we predict 13502 protein coding gene models, of which 4389 (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::68e8dbde94b7538bbfdb2e091f0a705c
https://doi.org/10.1101/2022.11.26.518055

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