Zobrazeno 1 - 10
of 49
pro vyhledávání: '"Sünje Johanna Pamp"'
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-15 (2022)
Abstract Varying technologies and experimental approaches used in microbiome studies often lead to irreproducible results due to unwanted technical variations. Such variations, often unaccounted for and of unknown source, may interfere with true biol
Externí odkaz:
https://doaj.org/article/0d0b54e233a34a4bb1997202e8c6309f
Autor:
Anna Cäcilia Ingham, Katrine Kielsen, Hanne Mordhorst, Marianne Ifversen, Frank M. Aarestrup, Klaus Gottlob Müller, Sünje Johanna Pamp
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-28 (2021)
Abstract Background Patients undergoing allogeneic hematopoietic stem cell transplantation (HSCT) exhibit changes in their gut microbiota and are experiencing a range of complications, including acute graft-versus-host disease (aGvHD). It is unknown
Externí odkaz:
https://doaj.org/article/6765786a3e214527996dca87c814480f
Publikováno v:
Microbiology Spectrum, Vol 9, Iss 2 (2021)
ABSTRACT Storage of biological specimens is crucial in the life and medical sciences. Storage conditions for samples can be different for a number of reasons, and it is unclear what effect this can have on the inferred microbiome composition in metag
Externí odkaz:
https://doaj.org/article/40809f47ad6c40ccb4e57508ecd9831f
Publikováno v:
mSystems, Vol 6, Iss 3 (2021)
This is, to the best of our knowledge, the first study to investigate plasmidomes at a global scale using long read sequencing from complex untreated domestic sewage. Previous metagenomic surveys have detected AMR genes in a variety of environments,
Externí odkaz:
https://doaj.org/article/0fd544ea7a2d496f9b1b690721178d51
Autor:
Anna Cäcilia Ingham, Katrine Kielsen, Malene Skovsted Cilieborg, Ole Lund, Susan Holmes, Frank M. Aarestrup, Klaus Gottlob Müller, Sünje Johanna Pamp
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-22 (2019)
Abstract Background Increasing evidence reveals the importance of the microbiome in health and disease and inseparable host-microbial dependencies. Host-microbe interactions are highly relevant in patients receiving allogeneic hematopoietic stem cell
Externí odkaz:
https://doaj.org/article/a1a95da451da4f8f8154a57f3a314126
Autor:
Ana Sofia Ribeiro Duarte, Katharina D. C. Stärk, Patrick Munk, Pimlapas Leekitcharoenphon, Alex Bossers, Roosmarijn Luiken, Steven Sarrazin, Oksana Lukjancenko, Sünje Johanna Pamp, Valeria Bortolaia, Jakob Nybo Nissen, Philipp Kirstahler, Liese Van Gompel, Casper Sahl Poulsen, Rolf Sommer Kaas, Maria Hellmér, Rasmus Borup Hansen, Violeta Munoz Gomez, Tine Hald
Publikováno v:
Frontiers in Public Health, Vol 8 (2020)
One Health surveillance of antimicrobial resistance (AMR) depends on a harmonized method for detection of AMR. Metagenomics-based surveillance offers the possibility to compare resistomes within and between different target populations. Its potential
Externí odkaz:
https://doaj.org/article/04a22bd46b45409f873b0a30bed3b6a4
Autor:
Claudia Sala, Hanne Mordhorst, Josephine Grützke, Annika Brinkmann, Thomas N. Petersen, Casper Poulsen, Paul D. Cotter, Fiona Crispie, Richard J. Ellis, Gastone Castellani, Clara Amid, Mikhayil Hakhverdyan, Soizick Le Guyader, Gerardo Manfreda, Joël Mossong, Andreas Nitsche, Catherine Ragimbeau, Julien Schaeffer, Joergen Schlundt, Moon Y. F. Tay, Frank M. Aarestrup, Rene S. Hendriksen, Sünje Johanna Pamp, Alessandra De Cesare
Publikováno v:
Microorganisms, Vol 8, Iss 12, p 1861 (2020)
An inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, one parasite, one yeast, o
Externí odkaz:
https://doaj.org/article/cb4534d9422741aa82bca0c28da20756
Autor:
Katrine Kielsen, Frank Møller Aarestrup, Sünje Johanna Pamp, Hanne Mordhorst, Marianne Ifversen, Klaus Müller, Anna Cäcilia Ingham
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-28 (2021)
Ingham, A C, Kielsen, K, Mordhorst, H, Ifversen, M, Aarestrup, F M, Müller, K G & Pamp, S J 2021, ' Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation ', Microbiome, vol. 9, no. 1, 148 . https://doi.org/10.1186/s40168-021-01100-2
Microbiome
Ingham, A C, Kielsen, K, Mordhorst, H, Ifversen, M, Aarestrup, F M, Müller, K G & Pamp, S J 2021, ' Microbiota long-term dynamics and prediction of acute graft-versus-host disease in pediatric allogeneic stem cell transplantation ', Microbiome, vol. 9, no. 1, 148 . https://doi.org/10.1186/s40168-021-01100-2
Microbiome
Abstract Background Patients undergoing allogeneic hematopoietic stem cell transplantation (HSCT) exhibit changes in their gut microbiota and are experiencing a range of complications, including acute graft-versus-host disease (aGvHD). It is unknown
Despite a yearly death toll of up to one million people due to parasite-related infections, parasites are still neglected in genomics research. While there is progress in the detection of bacteria and viruses using metagenomics in the context of infe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7e5a10fd7eb18bca4f0355be13411cdd
https://doi.org/10.1101/2022.03.27.485979
https://doi.org/10.1101/2022.03.27.485979
Publikováno v:
Ingham, A C & Pamp, S J 2022, ' Mucosal microbiotas and their role in stem cell transplantation ', APMIS, vol. 130, no. 12, pp. 741-750 . https://doi.org/10.1111/apm.13208
Mucosal microbiotas and their role in stem cell transplantation. Patients with hematological disorders such as leukemia often undergo allogeneic hematopoietic stem cell transplantation, and thereby receive stem cells from a donor for curation of dise
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26b3b43a81750a6d817753af00c9f477
https://orbit.dtu.dk/en/publications/1a11e7d7-4a93-4ba1-a3ae-f6c98f54689e
https://orbit.dtu.dk/en/publications/1a11e7d7-4a93-4ba1-a3ae-f6c98f54689e