Zobrazeno 1 - 10
of 19
pro vyhledávání: '"Süleyman Selim Çınaroğlu"'
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-15 (2023)
Abstract Inhibiting protein–protein interactions of the Myc family is a viable pharmacological strategy for modulation of the levels of Myc oncoproteins in cancer. Aurora A kinase (AurA) and N-Myc interaction is one of the most attractive targets o
Externí odkaz:
https://doaj.org/article/30e2bcf1b2da42ef9894294f4952d7bf
Autor:
Mustafa Er, Abdulati Miftah Abounakhla, Hakan Tahtaci, Ali Hasin Bawah, Süleyman Selim Çınaroğlu, Abdurrahman Onaran, Abdulilah Ece
Publikováno v:
Chemistry Central Journal, Vol 12, Iss 1, Pp 1-21 (2018)
Abstract Background This study aims to synthesise and characterise novel compounds containing 2-amino-1,3,4-thiadiazole and their acyl derivatives and to investigate antifungal activities. Similarity search, molecular dynamics and molecular docking w
Externí odkaz:
https://doaj.org/article/75539506211d412d958cd240c7ddf500
Autor:
Christoph Gorgulla, Süleyman Selim Çınaroğlu, Patrick D. Fischer, Konstantin Fackeldey, Gerhard Wagner, Haribabu Arthanari
Publikováno v:
International Journal of Molecular Sciences, Vol 22, Iss 11, p 5807 (2021)
The docking program PLANTS, which is based on ant colony optimization (ACO) algorithm, has many advanced features for molecular docking. Among them are multiple scoring functions, the possibility to model explicit displaceable water molecules, and th
Externí odkaz:
https://doaj.org/article/8a4f47c5241d42f8a8ed19d10f5d184b
Autor:
Christoph Gorgulla, AkshatKumar Nigam, Matt Koop, Süleyman Selim Çınaroğlu, Christopher Secker, Mohammad Haddadnia, Abhishek Kumar, Yehor Malets, Alexander Hasson, Minkai Li, Ming Tang, Roni Levin-Konigsberg, Dmitry Radchenko, Aditya Kumar, Minko Gehev, Pierre-Yves Aquilanti, Henry Gabb, Amr Alhossary, Gerhard Wagner, Alán Aspuru-Guzik, Yurii S. Moroz, Konstantin Fackeldey, Haribabu Arthanari
Early-stage drug discovery has been limited by initial hit identification and lead optimization and their associated costs (1). Ultra-large virtual screens (ULVSs), which involve the virtual evaluation of massive numbers of molecules to engage a macr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9ca5a8fe819decf96a9472c96b44e22f
https://doi.org/10.1101/2023.04.25.537981
https://doi.org/10.1101/2023.04.25.537981
Computational prediction of thermodynamic components with computational methods has become increasingly routine in computer-aided drug design. Although there has been significant recent effort and improvements in the calculation of free energy, the p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d389306a61d0c8b75f89877f5ee69fda
https://ora.ox.ac.uk/objects/uuid:bd3f9307-6a8b-4fe5-a7e0-2a9462f64135
https://ora.ox.ac.uk/objects/uuid:bd3f9307-6a8b-4fe5-a7e0-2a9462f64135
Autor:
Süleyman Selim Çınaroğlu, Emel Timucin
Publikováno v:
Briefings in Bioinformatics. 21:2112-2125
MM-PB/GBSA methods represent a higher-level scoring theory than docking. This study reports an extensive testing of different MM-GBSA scoring schemes on two bromodomain (BRD) datasets. The first set is composed of 24 BRPF1 complexes, and the second o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ebe5bb611eebe2414e2a5579917049dd
https://doi.org/10.1093/bib/bbz143
https://doi.org/10.1093/bib/bbz143
Autor:
Gerhard Wagner, Christoph Gorgulla, Patrick D. Fischer, Konstantin Fackeldey, Haribabu Arthanari, Süleyman Selim Çınaroğlu
Publikováno v:
International Journal of Molecular Sciences, Vol 22, Iss 5807, p 5807 (2021)
International Journal of Molecular Sciences
Volume 22
Issue 11
International Journal of Molecular Sciences
Volume 22
Issue 11
The docking program PLANTS, which is based on ant colony optimization (ACO) algorithm, has many advanced features for molecular docking. Among them are multiple scoring functions, the possibility to model explicit displaceable water molecules, and th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c57eb520363c8e05f31934127b4b885
https://www.mdpi.com/1422-0067/22/11/5807
https://www.mdpi.com/1422-0067/22/11/5807
Autor:
Abdul Rauf Siddiqi, Süleyman Selim Çınaroğlu, Rana Rehan Khalid, Osman Ugur Sezerman, Arooma Maryam
Modulating the activity of human soluble guanylate cyclase (hsGC) through allosteric regulation of the βH-NOX domain has been considered as an immediate treatment for cardiovascular disorder (CVDs). Currently available βH-NOX domain-specific agonis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b82cf33499f6f698ad2576c63100ad5c
Autor:
Sundeep Chaitanya Vedithi, Rana Rehan Khalid, Süleyman Selim Çınaroğlu, Arooma Maryam, Tom L. Blundell, Abdulilah Ece, Abdul Rauf Siddiqi
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 1625-1638 (2020)
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal
Graphical abstract
Protein kinase Iα (PKGIα) is a pivotal cyclic guanosine monophosphate (cGMP) signalling protein. Major steps related to the structural plasticity of PKGIα have been inferred but the structural aspects of the auto-inhibition
Protein kinase Iα (PKGIα) is a pivotal cyclic guanosine monophosphate (cGMP) signalling protein. Major steps related to the structural plasticity of PKGIα have been inferred but the structural aspects of the auto-inhibition
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14c408460a9b3f291dd7b4df32d7d604
https://hdl.handle.net/20.500.12445/1864
https://hdl.handle.net/20.500.12445/1864
Autor:
Hillary H. Le, Elise C. Manalo, Süleyman Selim Çınaroğlu, Taryn E. Kawashima, Justin S. Plaut, Burcin Duan Sahbaz, Jared M. Fischer, Aysegul Ors, Joshua C. Saldivar, E. Sila Ozdemir, Arnaud Quentel, Michelle M. Gomes, Gunseli Bayram Akcapinar, Emel Timucin, Ugur Sezerman, Yavuz Ahiska
Publikováno v:
SSRN Electronic Journal.
Background: Senescent cells accumulate in tissues over time as part of the natural aging process and the removal of senescent cells has shown promise for alleviating many different age-related diseases in mice. Cancer is an age-associated disease and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8fa9dceef0f2df00519d2d7a2391c67a
https://doi.org/10.2139/ssrn.3696890
https://doi.org/10.2139/ssrn.3696890