Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Søren M. Karst"'
Autor:
Thomas Y. Michaelsen, Marc Bennedbæk, Lasse E. Christiansen, Mia S. F. Jørgensen, Camilla H. Møller, Emil A. Sørensen, Simon Knutsson, Jakob Brandt, Thomas B. N. Jensen, Clarisse Chiche-Lapierre, Emilio F. Collados, Trine Sørensen, Celine Petersen, Vang Le-Quy, Mantas Sereika, Frederik T. Hansen, Morten Rasmussen, Jannik Fonager, Søren M. Karst, Rasmus L. Marvig, Marc Stegger, Raphael N. Sieber, Robert Skov, Rebecca Legarth, Tyra G. Krause, Anders Fomsgaard, The Danish COVID-19 Genome Consortium (DCGC), Mads Albertsen
Publikováno v:
Genome Medicine, Vol 14, Iss 1, Pp 1-13 (2022)
Abstract Background In early 2021, the SARS-CoV-2 lineage B.1.1.7 (Alpha variant) became dominant across large parts of the world. In Denmark, comprehensive and real-time test, contact-tracing, and sequencing efforts were applied to sustain epidemic
Externí odkaz:
https://doaj.org/article/0126e49679474a8297be703426b5ac4f
Autor:
Katja Spiess, Vithiagaran Gunalan, Ellinor Marving, Sofie Holdflod Nielsen, Michelle G. P. Jørgensen, Anna S. Fomsgaard, Line Nielsen, Alonzo Alfaro-Núñez, Søren M. Karst, Shila Mortensen, Morten Rasmussen, Ria Lassaunière, Maiken Worsøe Rosenstierne, Charlotta Polacek, Jannik Fonager, Arieh S. Cohen, Claus Nielsen, Anders Fomsgaard
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 1 (2023)
ABSTRACT Multiple mutations in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants of concern (VOCs) increase transmission, disease severity, and immune evasion and facilitate zoonotic or anthropozoonotic infections. Four such mutat
Externí odkaz:
https://doaj.org/article/dd8fc4256706407c99f17cdfe3a4d51f
Autor:
Caitlin M. Singleton, Francesca Petriglieri, Jannie M. Kristensen, Rasmus H. Kirkegaard, Thomas Y. Michaelsen, Martin H. Andersen, Zivile Kondrotaite, Søren M. Karst, Morten S. Dueholm, Per H. Nielsen, Mads Albertsen
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)
Microbes play key roles in wastewater treatment. Here, Singleton et al. use long-read and short-read sequencing to recover 1083 high-quality metagenome-assembled genomes from 23 wastewater treatment plants, and combine this information with amplicon
Externí odkaz:
https://doaj.org/article/d093b63b2bc34d1cba80ef3ca3aff026
Autor:
Simon J. McIlroy, Cristobal A. Onetto, Bianca McIlroy, Florian-Alexander Herbst, Morten S. Dueholm, Rasmus H. Kirkegaard, Eustace Fernando, Søren M. Karst, Marta Nierychlo, Jannie M. Kristensen, Kathryn L. Eales, Paul R. Grbin, Reinhard Wimmer, Per Halkjær Nielsen
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
Enhanced biological phosphorus removal (EBPR) involves the cycling of biomass through carbon-rich (feast) and carbon-deficient (famine) conditions, promoting the activity of polyphosphate accumulating organisms (PAOs). However, several alternate meta
Externí odkaz:
https://doaj.org/article/4d97d385e3184012a48e99703a6d7b23
Autor:
Simon J. McIlroy, Rasmus H. Kirkegaard, Morten S. Dueholm, Eustace Fernando, Søren M. Karst, Mads Albertsen, Per H. Nielsen
Publikováno v:
Frontiers in Microbiology, Vol 8 (2017)
Anaerobic digestion for biogas production is reliant on the tightly coupled synergistic activities of complex microbial consortia. Members of the uncultured A6 phylotype, within the phylum Chloroflexi, are among the most abundant genus-level-taxa of
Externí odkaz:
https://doaj.org/article/12742d61281d46aeb0392954d932f9c3
Autor:
Per H. Nielsen, Mikkel Stokholm-Bjerregaard, Simon J. McIlroy, Marta Nierychlo, Søren M. Karst, Mads Albertsen
Publikováno v:
Frontiers in Microbiology, Vol 8 (2017)
Understanding the microbiology of phosphorus (P) removal is considered essential to knowledge-based optimization of enhanced biological P removal (EBPR) systems. Biological P removal is achieved in these systems by promoting the growth of organisms c
Externí odkaz:
https://doaj.org/article/699ae5e9943f456991f5d0827c2836d9
Autor:
Katja Spiess, Ellinor Marving, Alonzo Alfaro-Núñez, Vithiagaran Gunalan, Sofie Holdflod Nielsen, Michelle G. P. Jørgensen, Anna S. Fomsgaard, Søren M. Karst, Shila Mortensen, Ria Lassaunière, Jannik Fonager, Morten Rasmussen, Maiken Worsøe Rosenstierne, Charlotta Polacek Strandh, Anne-Marie Vangsted, Claus Nielsen, Arieh S. Cohen, Anders Fomsgaard
Multiple SARS-CoV-2 variants have evolved increasing the transmissibility of the virus and/or cause its escape from immune response. Whole genome sequencing remains the gold standard and is implemented into national surveillance programs worldwide to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::380ae9fc40e9b0fcf0a6c7410b18b964
https://doi.org/10.17504/protocols.io.bvt5n6q6
https://doi.org/10.17504/protocols.io.bvt5n6q6
This protocol describes the preparation of long read amplicon libraries of nCoV-2019 for sequencing with the Oxford Nanopore MinION platform. The protocol is based on samples of rRNA extracts of the nCoV-2019 virus. Sequences for primers can be found
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d0f6d909460b8d3fc870f01a649b3239
https://doi.org/10.17504/protocols.io.bfc3jiyn
https://doi.org/10.17504/protocols.io.bfc3jiyn
Autor:
Simon J, McIlroy, Cristobal A, Onetto, Bianca, McIlroy, Florian-Alexander, Herbst, Morten S, Dueholm, Rasmus H, Kirkegaard, Eustace, Fernando, Søren M, Karst, Marta, Nierychlo, Jannie M, Kristensen, Kathryn L, Eales, Paul R, Grbin, Reinhard, Wimmer, Per Halkjær, Nielsen
Publikováno v:
Frontiers in Microbiology
Enhanced biological phosphorus removal (EBPR) involves the cycling of biomass through carbon-rich (feast) and carbon-deficient (famine) conditions, promoting the activity of polyphosphate accumulating organisms (PAOs). However, several alternate meta
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::61e66e44c9d4f1648250c93a63ef05aa
https://pubmed.ncbi.nlm.nih.gov/29875741
https://pubmed.ncbi.nlm.nih.gov/29875741
Autor:
Søren M. Karst, not provided Morten S. Dueholm, not provided Simon J. McIlroy, not provided Rasmus H. Kirkegaard, not provided Per H. Nielsen, not provided Mads Albertsen
This protocol describes the preparation of Illumina libraries for high through-put sequencing of full-length SSU rRNA sequences from all domains of life without primer bias. Sequences for primers and adaptorused can be found under guidelines.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::76704f2cfc115823378aba4fd1f765e3
https://doi.org/10.17504/protocols.io.h2rb8d6
https://doi.org/10.17504/protocols.io.h2rb8d6