Zobrazeno 1 - 10
of 107
pro vyhledávání: '"Ryszard W Adamiak"'
Autor:
Katarzyna Lepeta, Katarzyna J Purzycka, Katarzyna Pachulska‐Wieczorek, Marina Mitjans, Martin Begemann, Behnam Vafadari, Krystian Bijata, Ryszard W Adamiak, Hannelore Ehrenreich, Magdalena Dziembowska, Leszek Kaczmarek
Publikováno v:
EMBO Molecular Medicine, Vol 9, Iss 8, Pp 1100-1116 (2017)
Abstract Matrix metalloproteinase 9 (MMP‐9) has recently emerged as a molecule that contributes to pathological synaptic plasticity in schizophrenia, but explanation of the underlying mechanisms has been missing. In the present study, we performed
Externí odkaz:
https://doaj.org/article/feb3d99d19e44a4dbaf612ffffbb7a49
Autor:
Julita Gumna, Maciej Antczak, Ryszard W. Adamiak, Janusz M. Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzynska, Tomasz Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichao Miao, Marta Szachniuk, Agnieszka Rybarczyk
Publikováno v:
International Journal of Molecular Sciences, Vol 23, Iss 17, p 9630 (2022)
RNA is a unique biomolecule that is involved in a variety of fundamental biological functions, all of which depend solely on its structure and dynamics. Since the experimental determination of crystal RNA structures is laborious, computational 3D str
Externí odkaz:
https://doaj.org/article/048d60b80d7a4bcf983e8249a3c929ea
Autor:
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-11 (2018)
Abstract Background Computational RNA 3D structure prediction and modeling are rising as complementary approaches to high-resolution experimental techniques for structure determination. They often apply to substitute or complement them. Recently, res
Externí odkaz:
https://doaj.org/article/7477060bad8d4e9681d2bb08e0a453dc
Autor:
Joanna Sarzynska, Ryszard W. Adamiak, Agnieszka Korpeta, Marta Szachniuk, Mariusz Popenda, Tomasz Zok, Maciej Antczak
Publikováno v:
Nucleic Acids Research
Computational methods to predict RNA 3D structure have more and more practical applications in molecular biology and medicine. Therefore, it is crucial to intensify efforts to improve the accuracy and quality of predicted three-dimensional structures
Autor:
Julita Gumna, Maciej Antczak, Ryszard W. Adamiak, Janusz M. Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzynska, Tomasz Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Marta Szachniuk, Zhichao Miao, Agnieszka Rybarczyk
The outbreak of the COVID-19 pandemic has led to intensive studies of both the structure and replication mechanism of SARS-CoV-2. In spite of some secondary structure experiments being carried out, the 3D structure of the key function regions of the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fc4bbdc7d46d017217c9b892cb88fcce
https://doi.org/10.1101/2021.12.17.473170
https://doi.org/10.1101/2021.12.17.473170
Autor:
Joanna Sarzynska, David M.J. Lilley, Yi Xiao, Peinan Zhao, Michal J. Boniecki, Dinshaw J. Patel, Astha Joshi, Yuanzhe Zhou, Radoslaw Pluta, Clarence Yu Cheng, Lin Huang, Fang-Chieh Chou, Zhichao Miao, François Major, Li-Zhen Sun, Chenhan Zhao, Marcin Magnus, Andrey Krokhotin, Rhiju Das, Zhenzhen Zhang, Joseph D. Yesselman, Jakub Wiedemann, Yijin Liu, Olivier Mailhot, Xiaojun Xu, Andrew M. Watkins, Robert T. Batey, Yangwei Jiang, Caleb Geniesse, Maciej Antczak, Adriana Żyła, Siqi Tian, Aiming Ren, Nikolay V. Dokholyan, Thomas H. Mann, Tomasz Zok, Janusz M. Bujnicki, Shi-Jie Chen, Ryszard W. Adamiak, Eric Westhof, Barbara L. Golden, Jian Wang, Feng Ding, Marta Szachniuk, Mariusz Popenda, Paweł Piątkowski, Dong Zhang, Yi Cheng, Yi Zhang, Jun Wang
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
International audience; RNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of RNA 3D structure prediction. With agreement from crystallographers, the RNA structures are predicted by various groups before the publication
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce737604dde88ce4f4cd65a4a5aab7cf
https://hal.archives-ouvertes.fr/hal-02966062
https://hal.archives-ouvertes.fr/hal-02966062
Autor:
Maciej Antczak, Ryszard W. Adamiak, Tomasz Zok, Michal Zurkowski, Mariusz Popenda, Marta Szachniuk
Publikováno v:
Bioinformatics
Motivation Understanding the formation, architecture and roles of pseudoknots in RNA structures are one of the most difficult challenges in RNA computational biology and structural bioinformatics. Methods predicting pseudoknots typically perform this
Publikováno v:
Methods. 103:120-127
RNAs adopt specific, stable tertiary architectures to perform their activities. Knowledge of RNA tertiary structure is fundamental to understand RNA functions beginning with transcription and ending with turnover. Contrary to advanced RNA secondary s
Autor:
Michal Zurkowski, Mariusz Popenda, Marta Szachniuk, Ryszard W. Adamiak, Maciej Antczak, Tomasz Zok, Jacek Blazewicz
Publikováno v:
Nucleic Acids Research
In the field of RNA structural biology and bioinformatics, an access to correctly annotated RNA structure is of crucial importance, especially in the secondary and 3D structure predictions. RNApdbee webserver, introduced in 2014, primarily aimed to a
Autor:
Jacek Blazewicz, Maciej Antczak, Tomasz Ratajczak, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk, Piotr Lukasiak
Publikováno v:
Nucleic Acids Research
Nowadays, various methodologies can be applied to model RNA 3D structure. Thus, the plausible quality assessment of 3D models has a fundamental impact on the progress of structural bioinformatics. Here, we present RNAssess server, a novel tool dedica