Zobrazeno 1 - 10
of 35
pro vyhledávání: '"Ryan M. Ziels"'
Autor:
Hans Ghezzi, Yiyun M. Fan, Katharine M. Ng, Juan C. Burckhardt, Deanna M. Pepin, Xuan Lin, Ryan M. Ziels, Carolina Tropini
Publikováno v:
mSphere, Vol 9, Iss 7 (2024)
ABSTRACT Characterizing microbial communities at high resolution and with absolute quantification is crucial to unravel the complexity and diversity of microbial ecosystems. This can be achieved with PCR assays, which enable highly selective detectio
Externí odkaz:
https://doaj.org/article/3725aec87b9143eaa49845519179e3ce
Autor:
Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W. Berkeley Kauffman, Erin E. Nuccio, Steven J. Blazewicz, Jennifer Pett-Ridge, Katherine B. Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe-Fadrosh, Ryan M. Ziels, Rex R. Malmstrom
Publikováno v:
mSystems, Vol 8, Iss 4 (2023)
ABSTRACT Stable isotope probing (SIP) facilitates culture-independent identification of active microbial populations within complex ecosystems through isotopic enrichment of nucleic acids. Many DNA-SIP studies rely on 16S rRNA gene sequences to ident
Externí odkaz:
https://doaj.org/article/89714e1557644055a52c06f7ca084abc
Autor:
Stefano Campanaro, Laura Treu, Luis M. Rodriguez-R, Adam Kovalovszki, Ryan M. Ziels, Irena Maus, Xinyu Zhu, Panagiotis G. Kougias, Arianna Basile, Gang Luo, Andreas Schlüter, Konstantinos T. Konstantinidis, Irini Angelidaki
Publikováno v:
Biotechnology for Biofuels, Vol 13, Iss 1, Pp 1-18 (2020)
Abstract Background Microorganisms in biogas reactors are essential for degradation of organic matter and methane production. However, a comprehensive genome-centric comparison, including relevant metadata for each sample, is still needed to identify
Externí odkaz:
https://doaj.org/article/0c7245ef47c0408080f0e37959ddb1b2
Autor:
Xuan Lin, Melissa Glier, Kevin Kuchinski, Tenysha Ross-Van Mierlo, David McVea, John R. Tyson, Natalie Prystajecky, Ryan M. Ziels
Publikováno v:
mSystems, Vol 6, Iss 5 (2021)
ABSTRACT Wastewater-based genomic surveillance of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus shows promise to complement genomic epidemiology efforts. Multiplex tiling PCR is a desirable approach for targeted genome sequen
Externí odkaz:
https://doaj.org/article/c52ac1edd5234ee891c579310ee943b5
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Managing and engineering activated sludge wastewater treatment microbiomes for low-energy nitrogen removal requires process control strategies to stop the oxidation of ammonium at nitrite. Our ability to out-select nitrite-oxidizing bacteria
Externí odkaz:
https://doaj.org/article/223d7fbb734549cba8e7f11adcbe522d
Publikováno v:
mSystems, Vol 4, Iss 4 (2019)
ABSTRACT Linking the genomic content of uncultivated microbes to their metabolic functions remains a critical challenge in microbial ecology. Resolving this challenge has implications for improving our management of key microbial interactions in biot
Externí odkaz:
https://doaj.org/article/4a012f82126e49a2807921300ad052bd
Publikováno v:
Environmental Science & Technology. 56:11670-11682
Conventional bioprocess models for wastewater treatment are based on aggregated bulk biomass concentrations and do not incorporate microbial physiological diversity. Such a broad aggregation of microbial functional groups can fail to predict ecosyste
Autor:
Yilin Qiu, Avery J. C. Noonan, Kalen Dofher, Moritz Koch, Brandon Kieft, Xuan Lin, Ryan M. Ziels, Steven J. Hallam
Publikováno v:
Microbiology Resource Announcements. 12
We report the genome of Phormidium yuhuli AB48, which includes a circular chromosome and a circular plasmid (4,747,469 bp and 51,599 bp, respectively). This is currently the only closed reference genome of an isolate of the Phormidium genus, based on
Autor:
B. Conall Holohan, M. Salomé Duarte, M. Alejandra Szabo-Corbacho, Ana J. Cavaleiro, Andreia F. Salvador, M. Alcina Pereira, Ryan M. Ziels, Carla T. M. J. Frijters, Santiago Pacheco-Ruiz, Marta Carballa, Diana Z. Sousa, Alfons J. M. Stams, Vincent O’Flaherty, Jules B. van Lier, M. Madalena Alves
Publikováno v:
Environmental Science and Technology, 56(8), 4749-4775
Environmental Science and Technology 56 (2022) 8
Environmental Science and Technology 56 (2022) 8
The Supporting Information is available free of charge at: https://pubs.acs.org/doi/10.1021/acs.est.1c08722.
Several problems associated with the presence of lipids in wastewater treatment plants are usually overcome by removing them ahead of th
Several problems associated with the presence of lipids in wastewater treatment plants are usually overcome by removing them ahead of th
Autor:
Maria Cristina Gagliano, Pranav Sampara, Caroline M. Plugge, Hardy Temmink, Dainis Sudmalis, Ryan M. Ziels
Publikováno v:
Applied and Environmental Microbiology 88 (2022) 10
Applied and Environmental Microbiology, 88(10)
Applied and Environmental Microbiology, 88(10)
Recently, methanogenic archaea belonging to the genus Methanothrix were reported to have a fundamental role in maintaining stable ecosystem functioning in anaerobic bioreactors under different configurations/conditions. In this study, we reconstructe