Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Ryan, Tarpine"'
Publikováno v:
Journal of Computational Biology. 18:323-333
A phase transition is taking place today. The amount of data generated by genome resequencing technologies is so large that in some cases it is now less expensive to repeat the experiment than to store the information generated by the experiment. In
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3acfda6da1814f2d971a642ee4a23ed
https://doi.org/10.1089/cmb.2010.0288
https://doi.org/10.1089/cmb.2010.0288
Autor:
Hagit Shatkay, Chandra Kambhamettu, Gowri Somanath, M. V. Rohith, Ryan Tarpine, Kaidi Ma, Dorothea Blostein, Hogyeong Jeong, Sorin Istrail, Kyle Schutter
Publikováno v:
ICIP
Images form a rich information source, which remains underutilized in biomedical document classification. We present here work that uses both image- and text-based features in order to identify articles of interest, in this case, pertaining to cis-re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::98e1b54c7fa4b1c9c4563300b4df5d9c
https://doi.org/10.1109/icip.2015.7351648
https://doi.org/10.1109/icip.2015.7351648
Autor:
Ryan Tarpine, Kyle Schutter, Na Harrington, Santosh S. Nagaral, Hagit Shatkay, Ramya Narayanaswamy, R. Mv, Chandra Kambhamettu, Gowri Somanath, Sorin Istrail, Timothy G. Johnstone, Dorothea Blostein
Publikováno v:
BCB
Images form a significant and useful source of information in published biomedical articles, which is still under-utilized in biomedical document classification and retrieval. Much current work on biomedical image retrieval and classification employs
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b218d81ff210b0e41d1c4bba58294fc9
https://doi.org/10.1145/2382936.2382949
https://doi.org/10.1145/2382936.2382949
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642200359
RECOMB
RECOMB
We present results on two classes of problems. The first result addresses the long standing open problem of finding unifying principles for Linkage Disequilibrium (LD) measures in population genetics (Lewontin 1964 [10], Hedrick 1987 [8], Devlin and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::24a3056f744cb682e860f6150c3b9ffb
https://doi.org/10.1007/978-3-642-20036-6_42
https://doi.org/10.1007/978-3-642-20036-6_42
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 674
The CYRENE Project focuses on the study of cis-regulatory genomics and gene regulatory networks (GRN) and has three components: a cisGRN-Lexicon, a cisGRN-Browser, and the Virtual Sea Urchin software system. The project has been done in collaboration
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::c94443cc9c476c99fad6a139e029620c
https://pubmed.ncbi.nlm.nih.gov/20827603
https://pubmed.ncbi.nlm.nih.gov/20827603
Publikováno v:
Journal of computational biology : a journal of computational molecular cell biology. 17(6)
One of the central problems in computational biology is the reconstruction of evolutionary histories. While models incorporating recombination and homoplasy have been studied separately, a missing component in the theory is a robust and flexible unif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::abab074acdb26264b573ed4c247721f0
https://pubmed.ncbi.nlm.nih.gov/20583925
https://pubmed.ncbi.nlm.nih.gov/20583925
Gene expression is controlled by interactions between trans -regulatory factors and cis -regulatory DNA sequences, and these interactions constitute the essential functional linkages of gene regulatory networks (GRNs). Validation of GRN models requir
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::232303207ebf841ca4976315f8ced0c8
https://europepmc.org/articles/PMC2840491/
https://europepmc.org/articles/PMC2840491/
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642126826
RECOMB
RECOMB
A phase transition is taking place today The amount of data generated by genome resequencing technologies is so large that in some cases it is now less expensive to repeat the experiment than to store the information generated by the experiment In th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1c4398cef8d1f8237f1cca4e69d14f1a
https://doi.org/10.1007/978-3-642-12683-3_11
https://doi.org/10.1007/978-3-642-12683-3_11
Publikováno v:
Methods in Molecular Biology ISBN: 9781607618539
The CYRENE Project focuses on the study of cis-regulatory genomics and gene regulatory networks (GRN) and has three components: a cisGRN-Lexicon, a cisGRN-Browser, and the Virtual Sea Urchin software system. The project has been done in collaboration
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::168e87a4666d2ee39d0b4be5465e43de
https://doi.org/10.1007/978-1-60761-854-6_22
https://doi.org/10.1007/978-1-60761-854-6_22
Autor:
Ryan Tarpine, Sorin Istrail
Publikováno v:
Algorithmic Bioprocesses ISBN: 9783540888680
Algorithmic Bioprocesses
Algorithmic Bioprocesses
The regulatory genome is about the “system level organization of the core genomic regulatory apparatus, and how this is the locus of causality underlying the twin phenomena of animal development and animal evolution” (E.H. Davidson. The Regulator
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::359edec4cc39795efb106eb244f47a4e
https://doi.org/10.1007/978-3-540-88869-7_36
https://doi.org/10.1007/978-3-540-88869-7_36