Attacking performance bottlenecks

Autor: Ruud van der Pas

Publikováno v: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics

Multicore processors are becoming mainstream at a rapid pace. Thanks to this trend, even desktop and laptop computers are being turned into relatively small parallel computers. Although the aggregate computing capacity is increasing, the individual c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::96679f736207f91d788b89aa04d24531
https://doi.org/10.1002/047001153x.g409423

The lid method for exhaustive exploration of metastable states of complex systems

Autor: Ruud van der Pas, Paolo Sibani, J. Christian Schoen

Publikováno v: Sibani, P, van der Pas, R & Schön, J C 1999, ' The lid method for exhaustive exploration of metastable states of complex systems ', Computer Physics Communications, vol. 116, pp. 17-27 . https://doi.org/10.1016/S0010-4655(98)00176-3

The `lid' algorithm performs an exhaustive exploration of neighborhoods of local energy minima of energy landscapes. This paper describes an implementation of the algorithm, including issues of parallel performance and scalability. To illustrate the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ebd4e2e1258ace289dd5f02c5e3f11b
https://portal.findresearcher.sdu.dk/da/publications/38ce9410-ba98-11dc-9626-000ea68e967b

Using OpenMP : Portable Shared Memory Parallel Programming

Autor: Barbara Chapman, Gabriele Jost, Ruud van der Pas

A comprehensive overview of OpenMP, the standard application programming interface for shared memory parallel computing—a reference for students and professionals.'I hope that readers will learn to use the full expressibility and power of OpenMP. T