Výsledky vyhledávání - "Ruth E Richardson"

Akademický článek

Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-positive Sulfate and Metal-reducing Bacterium

Autor: Anne Elyse Otwell, Stephen J Callister, Erika M Zink, Richard D Smith, Ruth E Richardson

Publikováno v: Frontiers in Microbiology, Vol 7 (2016)

The proteomes of the metabolically versatile and poorly characterized Gram-positive bacterium Desulfotomaculum reducens MI-1 were compared across four cultivation conditions including sulfate reduction, soluble Fe(III) reduction, insoluble Fe(III) re

Externí odkaz: https://doaj.org/article/31506b7e30cb445a98698be06c699eac

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Akademický článek

Inferring Gene Networks for Strains of Dehalococcoides Highlights Conserved Relationships between Genes Encoding Core Catabolic and Cell-Wall Structural Proteins.

Autor: Cresten B Mansfeldt, Gretchen W Heavner, Annette R Rowe, Boris Hayete, Bruce W Church, Ruth E Richardson

Publikováno v: PLoS ONE, Vol 11, Iss 11, p e0166234 (2016)

The interpretation of high-throughput gene expression data for non-model microorganisms remains obscured because of the high fraction of hypothetical genes and the limited number of methods for the robust inference of gene networks. Therefore, to elu

Externí odkaz: https://doaj.org/article/7a681be6248046158640cd0338c8fa65

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Akademický článek

Use of De Novo Transcriptome Libraries to Characterize a Novel Oleaginous Marine Chlorella Species during the Accumulation of Triacylglycerols.

Autor: Cresten B Mansfeldt, Lubna V Richter, Beth A Ahner, William P Cochlan, Ruth E Richardson

Publikováno v: PLoS ONE, Vol 11, Iss 2, p e0147527 (2016)

Marine chlorophytes of the genus Chlorella are unicellular algae capable of accumulating a high proportion of cellular lipids that can be used for biodiesel production. In this study, we examined the broad physiological capabilities of a subtropical

Externí odkaz: https://doaj.org/article/ad07ddbbaacb42738ea9b75a1673bacd

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Akademický článek

SPINE: SParse eIgengene NEtwork linking gene expression clusters in Dehalococcoides mccartyi to perturbations in experimental conditions.

Autor: Cresten B Mansfeldt, Benjamin A Logsdon, Garrett E Debs, Ruth E Richardson

Publikováno v: PLoS ONE, Vol 10, Iss 2, p e0118404 (2015)

We present a statistical model designed to identify the effect of experimental perturbations on the aggregate behavior of the transcriptome expressed by the bacterium Dehalococcoides mccartyi strain 195. Strains of Dehalococcoides are used in sub-sur

Externí odkaz: https://doaj.org/article/d2792d056504427286cb84d7b9c60fe5

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Akademický článek

Cloning Should Be Simple: Escherichia coli DH5α-Mediated Assembly of Multiple DNA Fragments with Short End Homologies.

Autor: Maxim Kostylev, Anne E Otwell, Ruth E Richardson, Yo Suzuki

Publikováno v: PLoS ONE, Vol 10, Iss 9, p e0137466 (2015)

Numerous DNA assembly technologies exist for generating plasmids for biological studies. Many procedures require complex in vitro or in vivo assembly reactions followed by plasmid propagation in recombination-impaired Escherichia coli strains such as

Externí odkaz: https://doaj.org/article/4e4ad3e52fa2455c82a6226598dff48d

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Akademický článek

Treatment of Anaerobic Digester Liquids via Membrane Biofilm Reactors: Simultaneous Aerobic Methanotrophy and Nitrogen Removal

Autor: Egidio F. Tentori, Nan Wang, Caroline J. Devin, Ruth E. Richardson

Publikováno v: Microorganisms, Vol 12, Iss 9, p 1841 (2024)

Anaerobic digestion (AD) produces useful biogas and waste streams with high levels of dissolved methane (CH4) and ammonium (NH4+), among other nutrients. Membrane biofilm reactors (MBfRs), which support dissolved methane oxidation in the same reactor

Externí odkaz: https://doaj.org/article/f39ff5e3ac4440559f8f32eaafe737a3

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Akademický článek

Rapid qPCR-Based Water Quality Monitoring in New York State Recreational Waters

Autor: Cristina P. Fernández-Baca, Catherine M. Spirito, Justin S. Bae, Zsofia M. Szegletes, Nathan Barott, Desiree J. Sausele, Yolanda M. Brooks, Daniel L. Weller, Ruth E. Richardson

Publikováno v: Frontiers in Water, Vol 3 (2021)

Public swimming beaches often rely on culture-based methods to determine if fecal indicator bacteria (FIB) levels are greater than health risk-based beach action values (BAV). The slow turnaround time of culture-based assays can prevent effective bea

Externí odkaz: https://doaj.org/article/7979dec2f2b54bf1846b5b10c7316bdb

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Akademický článek

Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site

Autor: Gretchen L. W. Heavner, Cresten B. Mansfeldt, Michael J. Wilkins, Carrie D. Nicora, Garrett E. Debs, Elizabeth A. Edwards, Ruth E. Richardson

Publikováno v: Frontiers in Microbiology, Vol 10 (2019)

RNA-based biomarkers have been successfully detected at field sites undergoing in situ bioremediation, but the detection of expressed enzymes is a more direct way to prove activity for a particular biocatalytic process of interest since they provide

Externí odkaz: https://doaj.org/article/16b41099bfb54e91897a61fb8656a828

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Relationship Between Peat Type and Microbial Ecology in Sphagnum-Containing Peatlands of the Adirondack Mountains, NY, USA

Autor: Ruth E. Richardson, Andrew R. James, Janni Lin

Publikováno v: Microbial Ecology. 82:429-441

Peatland microbial community composition varies with respect to a range of biological and physicochemical variables. While the extent of peat degradation (humification) has been linked to microbial community composition along vertical stratification

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::bf4c031c0087c264e88409bb8a7a3a9b
https://doi.org/10.1007/s00248-020-01651-1

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