Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Ruslan N. Sharipov"'
Autor:
Elena O. Kutumova, Ilya R. Akberdin, Ilya N. Kiselev, Ruslan N. Sharipov, Vera S. Egorova, Anastasiia O. Syrocheva, Alessandro Parodi, Andrey A. Zamyatnin, Fedor A. Kolpakov
Publikováno v:
International Journal of Molecular Sciences, Vol 23, Iss 20, p 12560 (2022)
Cancer treatment and pharmaceutical development require targeted treatment and less toxic therapeutic intervention to achieve real progress against this disease. In this scenario, nanomedicine emerged as a reliable tool to improve drug pharmacokineti
Externí odkaz:
https://doaj.org/article/010baf17b2084df1b736bbb6caccd5d0
Autor:
Ilya R. Akberdin, Ilya N. Kiselev, Sergey S. Pintus, Ruslan N. Sharipov, Alexander Yu Vertyshev, Olga L. Vinogradova, Daniil V. Popov, Fedor A. Kolpakov
Publikováno v:
International Journal of Molecular Sciences, Vol 22, Iss 19, p 10353 (2021)
Skeletal muscle is the principal contributor to exercise-induced changes in human metabolism. Strikingly, although it has been demonstrated that a lot of metabolites accumulating in blood and human skeletal muscle during an exercise activate differen
Externí odkaz:
https://doaj.org/article/b039599255d943b7badfb29eb21af32c
Autor:
Ilya E. Vorontsov, Alla D. Fedorova, Ivan S. Yevshin, Ruslan N. Sharipov, Fedor A. Kolpakov, Vsevolod J. Makeev, Ivan V. Kulakovskiy
Publikováno v:
BMC Research Notes, Vol 11, Iss 1, Pp 1-3 (2018)
Abstract Objectives Mammalian genomics studies, especially those focusing on transcriptional regulation, require information on genomic locations of regulatory regions, particularly, transcription factor (TF) binding sites. There are plenty of publis
Externí odkaz:
https://doaj.org/article/4f50bc52e69f4ff5868245f0a73bf48e
Autor:
Elena Kutumova, Yury V. Kondrakhin, Ilya R. Akberdin, Alexander E. Kel, Ivan S. Yevshin, llya Kiselev, Semyon K. Kolmykov, Fedor A. Kolpakov, Anna S. Ryabova, S. S. Pintus, Nikita Mandrik, Ruslan N. Sharipov, Timur A. Kashapov
Publikováno v:
Nucleic Acids Research
BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to pro
Publikováno v:
Hygiene and sanitation. 96:133-137
In the review there highlighted contemporary concepts about the relation between the air pollution by the particulate matter (PM) and human morbidity and mortality rate due to cardiovascular diseases. There are considered results of the short- and lo
Autor:
Ruslan N. Sharipov, Yury V. Kondrakhin, Semyon K. Kolmykov, Fedor A. Kolpakov, Ivan S. Yevshin
Publikováno v:
Nucleic Acids Research
The current version of the Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org) contains information about: (i) transcription factor binding sites (TFBSs) and transcription coactivators identified by ChIP-seq experiments for Homo sap
Autor:
Alexander E. Kel, Ivan V. Kulakovskiy, Ruslan N. Sharipov, Ivan S. Yevshin, Yury V. Kondrakhin, Mikhail A. Kulyashov, Semyon K. Kolmykov, Fedor A. Kolpakov, Vsevolod J. Makeev
Publikováno v:
Nucleic Acids Research
The Gene Transcription Regulation Database (GTRD; http://gtrd.biouml.org/) contains uniformly annotated and processed NGS data related to gene transcription regulation: ChIP-seq, ChIP-exo, DNase-seq, MNase-seq, ATAC-seq and RNA-seq. With the latest r
Autor:
Ruslan N. Sharipov, Ivan S. Yevshi, Fedor Kolpakov, Yury V. Kondrakhin, Anna S. Ryabova, Semyon K. Kolmykov
Publikováno v:
2020 Cognitive Sciences, Genomics and Bioinformatics (CSGB).
Understanding the basic mechanisms of transcription regulation is a major challenge in modern biology. Regulation of transcription is a complex process in which transcription factors (TFs) play a key role. Chromatin immunoprecipitation followed by hi
Publikováno v:
Vavilovskij Žurnal Genetiki i Selekcii, Vol 20, Iss 6, Pp 779-786 (2017)
It is known that the 5’ untranslated region (5’ UTR) mRNA characteristics can influence translation initiation efficiency and specificity. Previous knowledge about 5’ UTR characteristics was obtained theoretically and in vitro for mRNA of indiv
Publikováno v:
EuPA Open Proteomics
Graphical abstract
Highlights • Selection of ChIP-seq subsets to compare TF site prediction methods is proposed. • MATCH is the best method to find sites in genomic sequences for majority of TFs. • Partial-AUC is most appropriate for compa
Highlights • Selection of ChIP-seq subsets to compare TF site prediction methods is proposed. • MATCH is the best method to find sites in genomic sequences for majority of TFs. • Partial-AUC is most appropriate for compa