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Autor:
Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Smith GR; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Zhang Z; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Chen X; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY 10010, USA., Chambers TL; Human Performance Laboratory, Ball State University, Muncie, IN 47306, USA., Ruf-Zamojski F; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA.; Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA., Mendelev N; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Cheng WS; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Zamojski M; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA.; Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA., Amper MAS; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Nair VD; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Marderstein AR; Department of Genetics, Stanford University, Stanford, CA 94305, USA.; Department of Pathology, Stanford University, Stanford, CA 94305, USA., Montgomery SB; Department of Genetics, Stanford University, Stanford, CA 94305, USA.; Department of Pathology, Stanford University, Stanford, CA 94305, USA., Troyanskaya OG; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY 10010, USA.; Department of Computer Science, Princeton University, Princeton, NJ 08544, USA., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA., Trappe T; Human Performance Laboratory, Ball State University, Muncie, IN 47306, USA., Trappe S; Human Performance Laboratory, Ball State University, Muncie, IN 47306, USA.; Senior author., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai (ISMMS), New York, NY 10029, USA.; Department of Computer Science, Princeton University, Princeton, NJ 08544, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 Oct 09. Date of Electronic Publication: 2023 Oct 09.
Autor:
Chen X; Center for Computational Biology, Flatiron Institute, New York, NY, USA.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Wang Y; Department of Computer Science, Princeton University, Princeton, NJ, USA., Cappuccio A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Cheng WS; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Zamojski FR; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Nair VD; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Miller CM; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Nudelman G; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Tadych A; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Theesfeld CL; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Vornholt A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., George MC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Ruffin F; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Dagher M; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Chawla DG; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Soares-Schanoski A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Spurbeck RR; Battelle Memorial Institute, Columbus, OH, USA., Ndhlovu LC; Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Sebra R; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kleinstein SH; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Pathology and Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Letizia AG; Naval Medical Research Center, Silver Spring, MD, USA., Ramos I; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Fowler VG Jr; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Woods CW; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. elena.zaslavsky@mssm.edu., Troyanskaya OG; Center for Computational Biology, Flatiron Institute, New York, NY, USA. ogt@genomics.princeton.edu.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA. ogt@genomics.princeton.edu.; Department of Computer Science, Princeton University, Princeton, NJ, USA. ogt@genomics.princeton.edu., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. stuart.sealfon@mssm.edu.
Publikováno v:
Nature computational science [Nat Comput Sci] 2023 Sep; Vol. 3 (9), pp. 805.
Autor:
Chen X; Center for Computational Biology, Flatiron Institute, New York, NY, USA.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Wang Y; Department of Computer Science, Princeton University, Princeton, NJ, USA., Cappuccio A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Cheng WS; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Zamojski FR; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Nair VD; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Miller CM; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Nudelman G; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Tadych A; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Theesfeld CL; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Vornholt A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., George MC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Ruffin F; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Dagher M; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Chawla DG; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Soares-Schanoski A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Spurbeck RR; Battelle Memorial Institute, Columbus, OH, USA., Ndhlovu LC; Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Sebra R; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kleinstein SH; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.; Department of Pathology and Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Letizia AG; Naval Medical Research Center, Silver Spring, MD, USA., Ramos I; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Fowler VG Jr; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Woods CW; Division of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, USA., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; These authors jointly supervised this work: Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon., Troyanskaya OG; Center for Computational Biology, Flatiron Institute, New York, NY, USA.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA.; Department of Computer Science, Princeton University, Princeton, NJ, USA.; These authors jointly supervised this work: Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; These authors jointly supervised this work: Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon.
Publikováno v:
Nature computational science [Nat Comput Sci] 2023 Jul; Vol. 3 (7), pp. 644-657. Date of Electronic Publication: 2023 Jul 25.
Autor:
Cappuccio A; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Chawla DG; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA., Chen X; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA., Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Cheng WS; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Mao W; Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA., Burke TW; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., Tsalik EL; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., Petzold E; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., Henao R; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., McClain MT; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., Woods CW; Center for Applied Genomics and Precision Medicine, Duke University School of Medicine, Durham, NC 27710, USA., Chikina M; Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA., Troyanskaya OG; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, NJ, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Kleinstein SH; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Pathology and Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA. Electronic address: steven.kleinstein@yale.edu., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: elena.zaslavsky@mssm.edu.
Publikováno v:
Cell systems [Cell Syst] 2022 Dec 21; Vol. 13 (12), pp. 989-1001.e8.
Autor:
Rubenstein AB; Department of Neurology, Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York., Hinkley JM; AdventHealth Translational Research Institute, Orlando, Florida., Nair VD; Department of Neurology, Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York., Nudelman G; Department of Neurology, Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York., Standley RA; AdventHealth Translational Research Institute, Orlando, Florida., Yi F; AdventHealth Translational Research Institute, Orlando, Florida., Yu G; AdventHealth Translational Research Institute, Orlando, Florida., Trappe TA; Human Performance Laboratory, Ball State University, Indianapolis, Indiana., Bamman MM; Department of Cell, Developmental, and Integrative Biology, UAB Center for Exercise Medicine, University of Alabama at Birmingham, Birmingham, Alabama., Trappe SW; Human Performance Laboratory, Ball State University, Indianapolis, Indiana., Sparks LM; AdventHealth Translational Research Institute, Orlando, Florida., Goodpaster BH; AdventHealth Translational Research Institute, Orlando, Florida., Vega RB; AdventHealth Translational Research Institute, Orlando, Florida., Sealfon SC; Department of Neurology, Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York., Zaslavsky E; Department of Neurology, Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York., Coen PM; AdventHealth Translational Research Institute, Orlando, Florida.
Publikováno v:
American journal of physiology. Endocrinology and metabolism [Am J Physiol Endocrinol Metab] 2022 Mar 01; Vol. 322 (3), pp. E260-E277. Date of Electronic Publication: 2022 Jan 24.
Autor:
Meyer M; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.; Galveston National Laboratory, Galveston, Texas, USA., Wang Y; Department of Computer Science and.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, New Jersey, USA., Edwards D; Moderna Inc., Cambridge, Massachusetts, USA., Smith GR; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Ramanathan P; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.; Galveston National Laboratory, Galveston, Texas, USA., Mire CE; Galveston National Laboratory, Galveston, Texas, USA.; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA., Pietzsch C; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.; Galveston National Laboratory, Galveston, Texas, USA., Chen X; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, New Jersey, USA.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, USA., Ge Y; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Cheng WS; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Henry C; Moderna Inc., Cambridge, Massachusetts, USA., Woods A; Moderna Inc., Cambridge, Massachusetts, USA., Ma L; Moderna Inc., Cambridge, Massachusetts, USA., Stewart-Jones GB; Moderna Inc., Cambridge, Massachusetts, USA., Bock KW; Infectious Disease Pathogenesis Section, Comparative Medicine Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, USA., Minai M; Infectious Disease Pathogenesis Section, Comparative Medicine Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, USA., Nagata BM; Infectious Disease Pathogenesis Section, Comparative Medicine Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, USA., Periasamy S; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.; Galveston National Laboratory, Galveston, Texas, USA., Shi PY; Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas, USA., Graham BS; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA., Moore IN; Infectious Disease Pathogenesis Section, Comparative Medicine Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, USA., Ramos I; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Troyanskaya OG; Department of Computer Science and.; Lewis-Sigler Institute of Integrative Genomics, Princeton University, Princeton, New Jersey, USA.; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, USA., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Carfi A; Moderna Inc., Cambridge, Massachusetts, USA., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Bukreyev A; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, USA.; Galveston National Laboratory, Galveston, Texas, USA.; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Publikováno v:
The Journal of clinical investigation [J Clin Invest] 2021 Oct 15; Vol. 131 (20).
Autor:
Meyer M, Wang Y, Edwards D, Smith GR, Rubenstein AB, Ramanathan P, Mire CE, Pietzsch C, Chen X, Ge Y, Cheng WS, Henry C, Woods A, Ma L, Stewart-Jones GBE, Bock KW, Minai M, Nagata BM, Periasamy S, Shi PY, Graham BS, Moore IN, Ramos I, Troyanskaya OG, Zaslavsky E, Carfi A, Sealfon SC, Bukreyev A
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2021 Jan 25. Date of Electronic Publication: 2021 Jan 25.
Autor:
Rubenstein AB; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA., Smith GR; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA., Raue U; Human Performance Laboratory, Ball State University, Muncie, Indiana, 47306, USA., Begue G; Human Performance Laboratory, Ball State University, Muncie, Indiana, 47306, USA., Minchev K; Human Performance Laboratory, Ball State University, Muncie, Indiana, 47306, USA., Ruf-Zamojski F; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA., Nair VD; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA., Wang X; Department of Neurology, Boston University Medical Center, Boston, MA, 02118, USA., Zhou L; Department of Neurology, Boston University Medical Center, Boston, MA, 02118, USA., Zaslavsky E; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA., Trappe TA; Human Performance Laboratory, Ball State University, Muncie, Indiana, 47306, USA., Trappe S; Human Performance Laboratory, Ball State University, Muncie, Indiana, 47306, USA., Sealfon SC; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA. stuart.sealfon@mssm.edu.; Center for Advanced Research on Diagnostic Assays (CARDA), Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA. stuart.sealfon@mssm.edu.
Publikováno v:
Scientific reports [Sci Rep] 2020 Jan 14; Vol. 10 (1), pp. 229. Date of Electronic Publication: 2020 Jan 14.
Autor:
Pethe MA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.; Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ 08854., Rubenstein AB; Computational Biology & Molecular Biophysics Program, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854., Khare SD; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854; sagar.khare@rutgers.edu.; Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.; Computational Biology & Molecular Biophysics Program, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2019 Jan 02; Vol. 116 (1), pp. 168-176. Date of Electronic Publication: 2018 Dec 26.