Zobrazeno 1 - 10
of 96
pro vyhledávání: '"Ross C Walker"'
Autor:
Dillion M Fox, Christopher M MacDermaid, Andrea M A Schreij, Magdalena Zwierzyna, Ross C Walker
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 4, p e1010032 (2022)
The 3-dimensional fold of an RNA molecule is largely determined by patterns of intramolecular hydrogen bonds between bases. Predicting the base pairing network from the sequence, also referred to as RNA secondary structure prediction or RNA folding,
Externí odkaz:
https://doaj.org/article/deef695ad64d4f97b4a98a650196faa2
Publikováno v:
PLoS ONE, Vol 16, Iss 10, p e0259101 (2021)
Reverse translation of polypeptide sequences to expressible mRNA constructs is a NP-hard combinatorial optimization problem. Each amino acid in the protein sequence can be represented by as many as six codons, and the process of selecting the combina
Externí odkaz:
https://doaj.org/article/013f6a0582994918a5bcad4764693e16
Autor:
Sulyman Barkho, Levi C T Pierce, Maria L McGlone, Sheng Li, Virgil L Woods, Ross C Walker, Joseph A Adams, Patricia A Jennings
Publikováno v:
PLoS Computational Biology, Vol 9, Iss 9, p e1003188 (2013)
The Src family of tyrosine kinases (SFKs) regulate numerous aspects of cell growth and differentiation and are under the principal control of the C-terminal Src Kinase (Csk). Csk and SFKs share a modular design with the kinase domain downstream of th
Externí odkaz:
https://doaj.org/article/bfbd58ccdb684fed88493358920fc89e
Publikováno v:
PLoS ONE, Vol 7, Iss 2, p e31377 (2012)
In order to suggest detailed mechanistic hypotheses for the formation and dehydration of a key carbinolamine intermediate in the T4 pyrimidine dimer glycosylase (T4PDG) reaction, we have investigated these reactions using steered molecular dynamics w
Externí odkaz:
https://doaj.org/article/41011110eda44ba4a2ae022807482dbe
Publikováno v:
Journal of Chemical Theory and Computation. 18:1726-1736
We extend the modular AMBER lipid force field to include anionic lipids, polyunsaturated fatty acid (PUFA) lipids, and sphingomyelin, allowing the simulation of realistic cell membrane lipid compositions, including raft-like domains. Head group torsi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18862d0af111c343fe844e09250b49bb
https://doi.org/10.1021/acs.jctc.1c01217
https://doi.org/10.1021/acs.jctc.1c01217
Autor:
Alexis Eichhorn, Payton Walters, James Biggerstaff, S. Stewart, Noha H. Youssef, Chelsea L. Murphy, Diana Soriano, Essences Ewing, Kaitlynn VanMol, Ryan Shahan, Mostafa S. Elshahed, Ross C. Walker
Publikováno v:
Environmental Microbiology. 23:4326-4343
An overwhelming majority of bacterial life remains uncharacterized. Recent efforts to assemble genomes from metagenomes have provided invaluable insights into these yet-uncultured bacterial lineages. We report on the characterization of 30 genomes be
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4a9f5d5373af14aa3e7393f380e3472
https://doi.org/10.1111/1462-2920.15614
https://doi.org/10.1111/1462-2920.15614
Reverse translation of polypeptide sequences to expressible mRNA constructs is a NP-hard combinatorial optimization problem. Each amino acid in the protein sequence can be represented by as many as six codons, and the process of selecting the combina
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1c18996109c4f7acadc1af5144ae933a
https://doi.org/10.1101/2021.02.19.431999
https://doi.org/10.1101/2021.02.19.431999
Publikováno v:
PLoS ONE, Vol 16, Iss 10, p e0259101 (2021)
PLoS ONE, Vol 16, Iss 10 (2021)
PLoS ONE
PLoS ONE, Vol 16, Iss 10 (2021)
PLoS ONE
Reverse translation of polypeptide sequences to expressible mRNA constructs is a NP-hard combinatorial optimization problem. Each amino acid in the protein sequence can be represented by as many as six codons, and the process of selecting the combina
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac1e2e717f63ca49a124cc9ccc755781
https://doaj.org/article/013f6a0582994918a5bcad4764693e16
https://doaj.org/article/013f6a0582994918a5bcad4764693e16
Publikováno v:
PLOS Computational Biology. 18:e1010032
The 3-dimensional fold of an RNA molecule is largely determined by patterns of intramolecular hydrogen bonds between bases. Predicting the base pairing network from the sequence, also referred to as RNA secondary structure prediction or RNA folding,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bf5e41e4becf97f38e5225c7adc009c4
https://doi.org/10.1371/journal.pcbi.1010032
https://doi.org/10.1371/journal.pcbi.1010032
Autor:
Ross C. Walker, Daniel J. Mermelstein, J. Andrew McCammon, Charles Y. Lin, Gard Nelson, Rachael Kretsch
Publikováno v:
Journal of Computational Chemistry. 39:1354-1358
Alchemical free energy (AFE) calculations based on molecular dynamics (MD) simulations are key tools in both improving our understanding of a wide variety of biological processes and accelerating the design and optimization of therapeutics for numero
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::11391391c9b92c28dd4021746fea2cfb
https://doi.org/10.1002/jcc.25187
https://doi.org/10.1002/jcc.25187