Zobrazeno 1 - 10
of 33
pro vyhledávání: '"Rongjun Ban"'
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-18 (2020)
Abstract Background A number of simulators have been developed for emulating next-generation sequencing data by incorporating known errors such as base substitutions and indels. However, their practicality may be degraded by functional and runtime li
Externí odkaz:
https://doaj.org/article/24085c520ba74b2184223e127a966d3c
Autor:
Jianing Gao, Changlin Wan, Huan Zhang, Ao Li, Qiguang Zang, Rongjun Ban, Asim Ali, Zhenghua Yu, Qinghua Shi, Xiaohua Jiang, Yuanwei Zhang
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-6 (2017)
Abstract Background Copy number variations (CNVs) are the main genetic structural variations in cancer genome. Detecting CNVs in genetic exome region is efficient and cost-effective in identifying cancer associated genes. Many tools had been develope
Externí odkaz:
https://doaj.org/article/b43b77d432df4d1ba2e8c2768da5b932
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-18 (2020)
BMC Bioinformatics
BMC Bioinformatics
Background A number of simulators have been developed for emulating next-generation sequencing data by incorporating known errors such as base substitutions and indels. However, their practicality may be degraded by functional and runtime limitations
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1910009486d1ca028c57795f3c163e95
http://link.springer.com/article/10.1186/s12859-020-03665-5
http://link.springer.com/article/10.1186/s12859-020-03665-5
Additional file 1: Figure S1. Presentations of Supplementary Figures and Tables.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::70567d465c18658669de5a9dc32b9cf3
Autor:
Jianing Gao, Qinghua Shi, Rongjun Ban, Qiguang Zang, Changlin Wan, Yuanwei Zhang, Huan Zhang, Xiaohua Jiang
Publikováno v:
Bioinformatics
Summary Next-generation sequencing has been widely applied to understand the complexity of non-coding RNAs (ncRNAs) in the last decades. Here, we present CPSS 2.0, an updated version of CPSS 1.0 for small RNA sequencing data analysis, with the follow
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::daf86b9621d49b858cc3b77f1264a3b3
https://doi.org/10.1093/bioinformatics/btx066
https://doi.org/10.1093/bioinformatics/btx066
Publikováno v:
Database: The Journal of Biological Databases and Curation
PIWI-interacting RNAs (piRNAs) are essential for transcriptional and post-transcriptional regulation of transposons and coding genes in germline. With the development of sequencing technologies, length variations of piRNAs have been identified in sev
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d877304f070e0c582f055028377c717
https://doi.org/10.1093/database/bay059
https://doi.org/10.1093/database/bay059
Autor:
Wei Zheng, Bo Xu, Ao Li, Furhan Iqbal, Rongjun Ban, Yuanwei Zhang, Qiguang Zang, Qinghua Shi, Yifan Yang, Qiaomei Hao, Huan Zhang
Publikováno v:
Bioinformatics. 32:2069-2071
Summary: Next-Generation Sequencing (NGS) technology has revealed that microRNAs (miRNAs) are capable of exhibiting frequent differences from their corresponding mature reference sequences, generating multiple variants: the isoforms of miRNAs (isomiR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ddfe8f0dd423464ebfabedf3abdf52c1
https://doi.org/10.1093/bioinformatics/btw070
https://doi.org/10.1093/bioinformatics/btw070
Autor:
Huan Zhang, Qinghua Shi, Xiaohua Jiang, Changlin Wan, Ao Li, Rongjun Ban, Zhenghua Yu, Yuanwei Zhang, Asim Ali, Jianing Gao, Qiguang Zang
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-6 (2017)
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-6 (2017)
Background Copy number variations (CNVs) are the main genetic structural variations in cancer genome. Detecting CNVs in genetic exome region is efficient and cost-effective in identifying cancer associated genes. Many tools had been developed accordi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d0feba1524204462d7462152fc442bc1
https://pubmed.ncbi.nlm.nih.gov/28974218
https://pubmed.ncbi.nlm.nih.gov/28974218
Autor:
Xiaojing Ma, Samir Droby, Yongsheng Liu, Jia Liu, Danfeng Zhang, Rongjun Ban, Michael Wisniewski, Junyang Yue, Guangwei Li, Danyang Chen
Publikováno v:
Database: The Journal of Biological Databases and Curation
Penicillium expansum , the causal agent of blue mold, is one of the most prevalent post-harvest pathogens, infecting a wide range of crops after harvest. In response, crops have evolved various defense systems to protect themselves against this and o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::101111b122ec7efaaaa2854d72529573
https://pubmed.ncbi.nlm.nih.gov/28365721
https://pubmed.ncbi.nlm.nih.gov/28365721
Autor:
Yifan Yang, Huan Zhang, Qiguang Zang, Furhan Iqbal, Qinghua Shi, Rongjun Ban, Ao Li, Yuanwei Zhang
Publikováno v:
Nucleic Acids Research
Small RNA (sRNA) Sequencing technology has revealed that microRNAs (miRNAs) are capable of exhibiting frequent variations from their canonical sequences, generating multiple variants: the isoforms of miRNAs (isomiRs). However, integrated tool to prec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d62b1f2b229b3b023a9ba6a1885a0391
https://pubmed.ncbi.nlm.nih.gov/27179030
https://pubmed.ncbi.nlm.nih.gov/27179030