Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Roman R. Stocsits"'
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-19 (2023)
Abstract Genome browsers facilitate integrated analysis of multiple genomics datasets yet visualize only a few regions at a time and lack statistical functions for extracting meaningful information. We present HiCognition, a visual exploration and ma
Externí odkaz:
https://doaj.org/article/64661975be9c4a6c8d955a709fa691bd
Autor:
Gordana Wutz, Rene Ladurner, Brian Glenn St Hilaire, Roman R Stocsits, Kota Nagasaka, Benoit Pignard, Adrian Sanborn, Wen Tang, Csilla Várnai, Miroslav P Ivanov, Stefan Schoenfelder, Petra van der Lelij, Xingfan Huang, Gerhard Dürnberger, Elisabeth Roitinger, Karl Mechtler, Iain Finley Davidson, Peter Fraser, Erez Lieberman-Aiden, Jan-Michael Peters
Publikováno v:
eLife, Vol 9 (2020)
Eukaryotic genomes are folded into loops. It is thought that these are formed by cohesin complexes via extrusion, either until loop expansion is arrested by CTCF or until cohesin is removed from DNA by WAPL. Although WAPL limits cohesin’s chromatin
Externí odkaz:
https://doaj.org/article/50f9b518193c4de2ba8e04afd984547d
Autor:
Johann Holzmann, Antonio Z Politi, Kota Nagasaka, Merle Hantsche-Grininger, Nike Walther, Birgit Koch, Johannes Fuchs, Gerhard Dürnberger, Wen Tang, Rene Ladurner, Roman R Stocsits, Georg A Busslinger, Béla Novák, Karl Mechtler, Iain Finley Davidson, Jan Ellenberg, Jan-Michael Peters
Publikováno v:
eLife, Vol 8 (2019)
The organisation of mammalian genomes into loops and topologically associating domains (TADs) contributes to chromatin structure, gene expression and recombination. TADs and many loops are formed by cohesin and positioned by CTCF. In proliferating ce
Externí odkaz:
https://doaj.org/article/b4dd695cfba54d39a1aacd86fcfa079a
Publikováno v:
bioRxiv
The 3D organization of the genome and epigenetic marks play important roles in gene expression, DNA repair, and chromosome segregation. Understanding how structure and composition of the chromatin fiber contribute to function requires integrated anal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::857c9a9af1cae130760b7681770316a3
https://doi.org/10.1101/2022.04.30.490134
https://doi.org/10.1101/2022.04.30.490134
Autor:
Edward J. Banigan, Wen Tang, Aafke A. van den Berg, Roman R. Stocsits, Gordana Wutz, Hugo B. Brandão, Georg A. Busslinger, Jan-Michael Peters, Leonid A. Mirny
Cohesin folds mammalian interphase chromosomes by extruding the chromatin fiber into numerous loops. “Loop extrusion” can be impeded by chromatin-bound factors, such as CTCF, which generates characteristic and functional chromatin organization pa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::63b26e147d48523673b2b39f496806a8
https://doi.org/10.1101/2022.01.07.475367
https://doi.org/10.1101/2022.01.07.475367
Autor:
Sean Powell, Ilya M. Flyamer, Jan-Michael Peters, Matthias J. Scherr, Wen Tang, Kikuё Tachibana, Karl E. Duderstadt, Bart J. H. Dequeker, Hugo B. Brandão, Iain F. Davidson, Imre Gaspar, Roman R. Stocsits, Johanna Gassler, Leonid A. Mirny
Publikováno v:
bioRxiv
Eukaryotic genomes are compacted into loops and topologically associating domains (TADs), which contribute to transcription, recombination and genomic stability. Cohesin extrudes DNA into loops that are thought to lengthen until CTCF boundaries are e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e698e812f094fd4d44684eb230da516c
https://doi.org/10.1101/2020.10.15.340356
https://doi.org/10.1101/2020.10.15.340356
Autor:
Tobias Neumann, Mikhail Spivakov, Jan-Michael Peters, Wen Tang, Valeriya Malysheva, Michiel J. Thiecke, Gordana Wutz, Stephen Bevan, Stefan Schoenfelder, Matthias Muhar, Roman R. Stocsits, Peter Fraser, Johannes Zuber
It is currently assumed that 3D chromosomal organisation plays a central role in transcriptional control. However, recent evidence shows that steady-state transcription of only a minority of genes is affected by depletion of architectural proteins su
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2299a3e16fa5822f8147d03146523245
https://doi.org/10.1101/2020.02.10.941989
https://doi.org/10.1101/2020.02.10.941989
Autor:
Stefan Schoenfelder, Brian Glenn St Hilaire, Petra van der Lelij, Jan-Michael Peters, Wen Tang, Gordana Wutz, Karl Mechtler, Iain F. Davidson, Adrian L. Sanborn, Benoit Pignard, Miroslav P Ivanov, Roman R. Stocsits, Peter Fraser, Elisabeth Roitinger, Xingfan Huang, Erez Lieberman Aiden, Kota Nagasaka, Rene Ladurner, Gerhard Dürnberger, Csilla Várnai
Publikováno v:
eLife
eLife, Vol 9 (2020)
eLife, Vol 9 (2020)
Eukaryotic genomes are folded into loops. It is thought that these are formed by cohesin complexes via extrusion, either until loop expansion is arrested by CTCF or until cohesin is removed from DNA by WAPL. Although WAPL limits cohesin’s chromatin
Autor:
Adrian L. Sanborn, Elisabeth Roitinger, Gordana Wutz, Miroslav P Ivanov, Rene Ladurner, Petra van der Lelij, Xingfan Huang, Kota Nagasaka, Stefan Schoenfelder, Gerhard Dürnberger, Csilla Várnai, Iain F. Davidson, Roman R. Stocsits, Peter Fraser, Brian Glenn St Hilaire, Benoit Pignard, Karl Mechtler, Erez Lieberman-Aiden, Jan-Michael Peters, Wen Tang
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c6c98df71591813ef0c13098de15676d
https://doi.org/10.7554/elife.52091.sa2
https://doi.org/10.7554/elife.52091.sa2
Autor:
Jan Ellenberg, Csilla Várnai, David A. Cisneros, Jan-Michael Peters, Johannes Zuber, Moritz Kueblbeck, Birgit Koch, Wen Tang, Stefan Schoenfelder, Matthias Muhar, M. Julius Hossain, Gregor Jessberger, Nike Walther, Gordana Wutz, Roman R. Stocsits, Peter Fraser, Kota Nagasaka
Publikováno v:
The EMBO Journal. 36:3573-3599
Mammalian genomes are spatially organized into compartments, topologically associating domains (TADs), and loops to facilitate gene regulation and other chromosomal functions. How compartments, TAD ...