SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

Autor: Roman Prytuliak, Friedhelm Pfeiffer, Bianca Hermine Habermann

Publikováno v: BMC Bioinformatics, Vol 19, Iss 1, Pp 1-19 (2018)

Abstract Background Protein or nucleic acid sequences contain a multitude of associated annotations representing continuous sequence elements (CSEs). Comparing these CSEs is needed, whenever we want to match identical annotations or integrate distinc

Externí odkaz: https://doaj.org/article/a091302f2d184832bd4e3b4704f4b67e

HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons

Autor: Bianca Habermann, Roman Prytuliak, Markus Meier, Michael Volkmer

Publikováno v: Nucleic Acids Research (London)
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2017, 45 (18), pp.10921-10921. ⟨10.1093/nar/gkx810⟩
Nucleic Acids Research, Oxford University Press, 2017, 45 (W1), pp.W470-W477. ⟨10.1093/nar/gkx341⟩
Nucleic Acids Research, 2017, 45 (18), pp.10921-10921. ⟨10.1093/nar/gkx810⟩
Nucleic Acids Research, 2017, 45 (W1), pp.W470-W477. ⟨10.1093/nar/gkx341⟩

International audience; Short linear motifs (SLiMs) in proteins are self-sufficient functional sequences that specify interaction sites for other molecules and thus mediate a multitude of functions. Computational, as well as experimental biological r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a235f20ed10eb09dd33a480356c70f32
https://hdl.handle.net/11858/00-001M-0000-002E-0BBB-911858/00-001M-0000-002D-DB25-211858/00-001M-0000-002D-DB23-611858/00-001M-0000-002D-DB26-F