Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Romain Pogorelcnik"'
Publikováno v:
Mobile DNA, Vol 9, Iss 1, Pp 1-6 (2018)
Abstract Background The field of small RNA is one of the most investigated research areas since they were shown to regulate transposable elements and gene expression and play essential roles in fundamental biological processes. Small RNA deep sequenc
Externí odkaz:
https://doaj.org/article/17cccf619d6248f1b4f48b1d44e19d08
Autor:
Yoko Ikeda, Thierry Pélissier, Pierre Bourguet, Claude Becker, Marie-Noëlle Pouch-Pélissier, Romain Pogorelcnik, Magdalena Weingartner, Detlef Weigel, Jean-Marc Deragon, Olivier Mathieu
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-10 (2017)
Host genomes have evolved multiple silencing mechanisms to repress transposable element activity. Here Ikedaet al. show that the Arabidopsis MAIL1 and MAINgenes encode a retrotransposon-related plant mobile domain and define an alternative silencing
Externí odkaz:
https://doaj.org/article/06df2a00ddf14b3da7dadc08f7b5cb32
Publikováno v:
Algorithms, Vol 3, Iss 2, Pp 197-215 (2010)
This paper is a review which presents and explains the decomposition of graphs by clique minimal separators. The pace is leisurely, we give many examples and figures. Easy algorithms are provided to implement this decomposition. The historical and th
Externí odkaz:
https://doaj.org/article/d62ab35619ed45c28863ad2b6ba7d8ad
Autor:
Takashi Hirayama, Yoko Ikeda, Takayuki Kohchi, Shohei Yamaoka, Olivier Mathieu, Daniel Grimanelli, Romain Pogorelcnik, Katsuyuki T. Yamato, Ryuichi Nishihama, Robert A. Martienssen, Mario A. Arteaga-Vazquez, Adolfo Aguilar-Cruz
Publikováno v:
Plant and Cell Physiology
Plant and Cell Physiology, Oxford University Press (OUP), 2018, 59 (12), pp.2421-2431. ⟨10.1093/pcp/pcy161⟩
Plant and Cell Physiology, 2018, 59 (12), pp.2421-2431. ⟨10.1093/pcp/pcy161⟩
Plant and Cell Physiology, Oxford University Press (OUP), 2018, 59 (12), pp.2421-2431. ⟨10.1093/pcp/pcy161⟩
Plant and Cell Physiology, 2018, 59 (12), pp.2421-2431. ⟨10.1093/pcp/pcy161⟩
DNA methylation is an epigenetic mark that ensures silencing of transposable elements (TEs) and affects gene expression in many organisms. The function of different DNA methylation regulatory pathways has been largely characterized in the model plant
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6bf66eb767651c8bd56380c0cbb4807
https://hal.uca.fr/hal-01917149/file/Ikeda_et_al_PCP_2018.pdf
https://hal.uca.fr/hal-01917149/file/Ikeda_et_al_PCP_2018.pdf
Autor:
Catherine Vaurs-Barrière, Philippe Arnaud, Marie-Elisa Pinson, Romain Pogorelcnik, Franck Court
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2017, ⟨10.1093/bioinformatics/btx671⟩
Bioinformatics, 2017, ⟨10.1093/bioinformatics/btx671⟩
Bioinformatics, Oxford University Press (OUP), 2017, ⟨10.1093/bioinformatics/btx671⟩
Bioinformatics, 2017, ⟨10.1093/bioinformatics/btx671⟩
Summary L1 Chimeric Transcripts (LCTs) are initiated by repeated LINE-1 element antisense promoters and include the L1 5′UTR sequence in antisense orientation followed by the adjacent genomic region. LCTs have been characterized mainly using bioinf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::012e1e862d48c2d57bf2154684eab585
https://hal.uca.fr/hal-01629422/document
https://hal.uca.fr/hal-01629422/document
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2013, 29 (7), pp.837-844. ⟨10.1093/bioinformatics/btt049⟩
Bioinformatics, 2013, 29 (7), pp.837-844. ⟨10.1093/bioinformatics/btt049⟩
Bioinformatics, Oxford University Press (OUP), 2013, 29 (7), pp.837-844. ⟨10.1093/bioinformatics/btt049⟩
Bioinformatics, 2013, 29 (7), pp.837-844. ⟨10.1093/bioinformatics/btt049⟩
Motivation: Gene fusion is an important evolutionary process. It can yield valuable information to infer the interactions and functions of proteins. Fused genes have been identified as non-transitive patterns of similarity in triplets of genes. To be
Autor:
Claude Becker, Detlef Weigel, Mélanie Rigal, Yoko Ikeda, Jane Devos, Romain Pogorelcnik, Olivier Mathieu, Thierry Pélissier
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2016, 113 (14), pp.E2083-E2092. ⟨10.1073/pnas.1600672113⟩
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (14), pp.E2083-E2092. ⟨10.1073/pnas.1600672113⟩
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2016, 113 (14), pp.E2083-E2092. ⟨10.1073/pnas.1600672113⟩
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (14), pp.E2083-E2092. ⟨10.1073/pnas.1600672113⟩
Genes and transposons can exist in variable DNA methylation states, with potentially differential transcription. How these epialleles emerge is poorly understood. Here, we show that crossing an Arabidopsis thaliana plant with a hypomethylated genome
Publikováno v:
Discrete Applied Mathematics
Discrete Applied Mathematics, Elsevier, 2014, 177, pp.1-13. 〈10.1016/j.dam.2014.05.030〉
Discrete Applied Mathematics, Elsevier, 2014, 177, pp.1-13. ⟨10.1016/j.dam.2014.05.030⟩
Discrete Applied Mathematics, 2014, 177, pp.1-13. ⟨10.1016/j.dam.2014.05.030⟩
Discrete Applied Mathematics, Elsevier, 2014, 177, pp.1-13. 〈10.1016/j.dam.2014.05.030〉
Discrete Applied Mathematics, Elsevier, 2014, 177, pp.1-13. ⟨10.1016/j.dam.2014.05.030⟩
Discrete Applied Mathematics, 2014, 177, pp.1-13. ⟨10.1016/j.dam.2014.05.030⟩
We define an atom tree of a graph as a generalization of a clique tree: its nodes are the atoms obtained by clique minimal separator decomposition, and its edges correspond to the clique minimal separators of the graph. Given a graph G , we compute a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cfabe6c26880e96127d5585e42486f06
https://hal.archives-ouvertes.fr/hal-01375915/file/Berry_al_revision2.pdf
https://hal.archives-ouvertes.fr/hal-01375915/file/Berry_al_revision2.pdf
Autor:
Romain Pogorelcnik, Anne Berry
Publikováno v:
Information Processing Letters
Information Processing Letters, 2011, 111 (11), pp.Pages 508-511. ⟨10.1016/j.ipl.2011.02.013⟩
Information Processing Letters, Elsevier, 2011, 111 (11), pp.Pages 508-511. ⟨10.1016/j.ipl.2011.02.013⟩
Information Processing Letters, 2011, 111 (11), pp.Pages 508-511. ⟨10.1016/j.ipl.2011.02.013⟩
Information Processing Letters, Elsevier, 2011, 111 (11), pp.Pages 508-511. ⟨10.1016/j.ipl.2011.02.013⟩
We present a simple unified algorithmic process which uses either LexBFS or MCS on a chordal graph to generate the minimal separators and the maximal cliques in linear time in a single pass.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67ac040552d766f083faacc73edb6e92
https://hal.science/hal-00678694
https://hal.science/hal-00678694
Autor:
Rucha Datar, Sylvain Orenga, Romain Pogorelcnik, Olivier Rochas, Patricia J Simner, Alex van Belkum
Publikováno v:
Clinical Chemistry
BackgroundAntimicrobial susceptibility testing (AST) is classically performed using growth-based techniques that essentially require viable bacterial matter to become visible to the naked eye or a sophisticated densitometer.ContentTechnologies based