Genomic footprints of activated telomere maintenance mechanisms in cancer

Autor: Lina Sieverling, Chen Hong, Sandra D. Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M. Braun, Isidro Cortés-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J. Park, Roland Eils, Matthias Schlesner, PCAWG-Structural Variation Working Group, Benedikt Brors, Karsten Rippe, David T. W. Jones, Lars Feuerbach, PCAWG Consortium

Publikováno v: Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)

In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types a

Externí odkaz: https://doaj.org/article/f5ba2ff084914f529104ae4627a4c3f7

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

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Zechen, Chong, Oliver, Drechsel, Lewis Jonathan Dursi, Roland, Eils, Shadrielle M, G Espiritu, Robert, S Fulton, Shengjie, Gao, Josep L, L Gelpi, Mark, B Gerstein, Santiago, Gonzalez, Ivo, G Gut, Faraz, Hach, Michael, C Heinold, Jonathan, Hinton, Taobo, Hu, Vincent, Huang, Huang, Yi, Barbara, Hutter, David, R Jones, Jongsun, Jung, Natalie, Jäger, Hyung-Lae, Kim, Kortine, Kleinheinz, Sushant, Kumar, Yogesh, Kumar, Christopher, M Lalansingh, Ivica, Letunic, Dimitri, Livitz, Eric, Z Ma, Yosef, E Maruvka, R Jay Mashl, Andrew, Menzies, Ana, Milovanovic, Morten Muhlig Nielsen, Stephan, Ossowski, Nagarajan, Paramasivam, Jakob Skou Pedersen, Marc, D Perry, Montserrat, Puiggròs, Keiran, M Raine, Esther, Rheinbay, Romina, Royo, S Cenk Sahinalp, Iman, Sarrafi, Matthias, Schlesner, Jared, T Simpson, Lucy, Stebbings, Miranda, D Stobbe, Jon, W Teague, Grace, Tiao, David, Torrents, Jeremiah, A Wala, Jiayin, Wang, Sebastian, M Waszak, Joachim, Weischenfeldt, Michael, C Wendl, Johannes, Werner, 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Publikováno v: Nature Communications, 11(1):4748. Nature Publishing Group
Nature communications, 11(1):4748. Nature Publishing Group
Nature communications, 11 (1
NATURE COMMUNICATIONS
Nature Communications, 11 (1)
Nature Communications, Vol 11, Iss 1, Pp 1-27 (2020)
Bailey, M H, Meyerson, W U, Dursi, L J, Wang, L B, Dong, G, Liang, W W, Weerasinghe, A, Li, S, Kelso, S, Akbani, R, Anur, P, Bailey, M H, Buchanan, A, Chiotti, K, Covington, K, Creason, A, Ding, L, Weischenfeldt, J, Brunak, S, Ding, L, Favero, F, MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium 2020, ' Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples ', Nature Communications, vol. 11, no. 1, 4748 . https://doi.org/10.1038/s41467-020-18151-y
Bailey, Matthew H; Meyerson, William U; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C; Wheeler, David A; Getz, Gad; Simpson, Jared T; Gerstein, Mark B; Ding, Li (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1), p. 4748. Springer Nature 10.1038/s41467-020-18151-y
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Bailey, M H, Meyerson, W U, Dursi, L J, Wang, L B, Dong, G, Liang, W W, Weerasinghe, A, Li, S, Kelso, S, Akbani, R, Anur, P, Bailey, M H, Buchanan, A, Chiotti, K, Covington, K, Creason, A, Ding, L, MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium 2020, ' Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples ', Nature Communications, vol. 11, no. 1, 4748 . https://doi.org/10.1038/s41467-020-18151-y
Recercat: Dipósit de la Recerca de Catalunya
Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)

MC3 Working Group: Rehan Akbani21, Pavana Anur22, Matthew H. Bailey1,2,3, Alex Buchanan9, Kami Chiotti9, Kyle Covington12,23, Allison Creason9, Li Ding1,2,3,20, Kyle Ellrott9, Yu Fan21, Steven Foltz1,2, Gad Getz8,14,15,16, Walker Hale12, David Haussl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79caf69aa08507159a37977adcb4937b
https://www.bib.irb.hr/1104730

Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer

Autor: Hartwig Huland, Tobias Rausch, Ronald Simon, Jan O. Korbel, Malte Mader, Constance Baer, Lei Gu, Christian Lawerenz, Rainer Claus, Stephan Gade, Sawinee Masser, Roland Eils, Christoph Plass, Hans-Jörg Warnatz, Dieter Weichenhan, Lia Burkhardt, Laura Stumm, Barbara Hutter, Benedikt Brors, Olga Bogatyrova, Lars Feuerbach, Adrian M. Stütz, Marc Sultan, Markus Graefen, Joachim Weischenfeldt, Martina Kluth, Rami Galal, Henning Stehr, Stefan Steurer, Holger Sültmann, Vyacheslav Amstislavskiy, Nina Amschler, Katharina Grupp, Hans Lehrach, Meryem Avci, Manfred Schmidt, Jovisa Gjoni, Christof von Kalle, S. Radomski, Thomas Zichner, Vladimir Benes, Hüseyin Sirma, Maria Fälth, Guido Sauter, Jürgen Eils, Karin Schlangen, Natalie Jäger, Cynthia C. Bartholomae, Daniela Wuttig, Rolf Kabbe, Thomas Haß, Sarah Minner, Dmitri Parkhomchuk, Clarissa Gerhäuser, Ruprecht Kuner, Antje Krohn, Po Hsien Huang, Marie-Laure Yaspo, Thorsten Schlomm, Benjamin Raeder

Publikováno v: Cancer Cell; Vol 23
Cancer Cell

SummaryEarly-onset prostate cancer (EO-PCA) represents the earliest clinical manifestation of prostate cancer. To compare the genomic alteration landscapes of EO-PCA with “classical” (elderly-onset) PCA, we performed deep sequencing-based genomic

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b31f758e7673f16412e27e7dd86b576a
https://doi.org/10.1016/j.ccr.2013.01.002

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

Autor: Marc Dabad, John Douglas Mcpherson, Xose S. Puente, Liu Xi, Ivo Gut, Anne-Marie Patch, Semin Lee, Cyriac Kandoth, Ruben M. Drews, Charlotte Anderson, Eivind Hovig, Paul C. Boutros, Peter J. Campbell, Louis Letourneau, Paolo Ribeca, Hidewaki Nakagawa, Natalie Jäger, Daniel Vodak, Thomas J. Hudson, Anne Sophie Sertier, Pablo H. Hennings-Yeomans, John Zhang, Philip Ginsbach, Laurie Tonon, Emanuele Raineri, Sahil Seth, Sophia Derdak, Benedikt Brors, David T. W. Jones, Minghui He, Sergi Beltran, Rafael Valdés-Mas, David Torrents, Singer Ma, Myron Peto, Nagarajan Paramasivam, Matthew D. Eldridge, Robert E. Denroche, Paul T. Spellman, Francesc Castro Giner, Roland Eils, Timothy Beck, Sigve Nakken, Daniela S. Gerhard, Lawrence E. Heisler, Jared T. Simpson, Víctor Quesada, Rolf Kabbe, Andy G. Lynch, Patrick S. Tarpey, Lawrence Bower, Akihiro Fujimoto, Barbara Hutter, Matthias Schlesner, Marta Gut, Ivo Buchhalter, David A. Wheeler, Takafumi N. Yamaguchi, Simon Heath, Nicholas J. Harding, Tyler Alioto

The emergence of next generation DNA sequencing technology is enabling high-resolution cancer genome analysis. Large-scale projects like the International Cancer Genome Consortium (ICGC) are systematically scanning cancer genomes to identify recurren

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8be0553b35fcc131ab256838132ea3c7
https://doi.org/10.1101/012997

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

Autor: Matthew D. Eldridge, Sasithorn Chotewutmontri, Susanne Gröbner, Eivind Hovig, Ivo Gut, Minghui He, Hidewaki Nakagawa, Charlotte Anderson, Rafael Valdés-Mas, Lars Feuerbach, Sergi Beltran, Adam Butler, Nagarajan Paramasivam, John Douglas Mcpherson, Akihiro Fujimoto, Ann-Marie Patch, Ivo Buchhalter, Laurie Tonon, Stefan M. Pfister, Víctor Quesada, Jon W. Teague, Sabine Schmidt, David T. W. Jones, Sahil Seth, David Torrents, Singer Ma, Marta Gut, Semin Lee, Robert E. Denroche, Carlos López-Otín, Andy G. Lynch, David A. Wheeler, Takafumi N. Yamaguchi, Lucy Stebbings, Ruben M. Drews, Roland Eils, Marc Dabad, Tyler Alioto, Barbara Hutter, Rebecca Shepherd, Peter Lichter, Sigve Nakken, Daniel Vodak, Simon Heath, Rolf Kabbe, Christopher Previti, Paul T. Spellman, Nicola Waddell, Jared T. Simpson, John V. Pearson, Timothy Beck, Patrick S. Tarpey, Daniela S. Gerhard, Andrew Menzies, Francesc Castro Giner, Paolo Ribeca, Nicholas J. Harding, Liu Xi, Nicolle Diessl, Emanuele Raineri, Lawrence E. Heisler, Jonathan Hinton, Xose S. Puente, Cyriac Kandoth, Natalie Jäger, David T. Jones, Matthias Schlesner, Louis Letourneau, Sean M. Grimmond, Elias Campo, Peter J. Campbell, Keiran Raine, Lawrence Bower, Michael Heinold, Andrey Korshunov, Thomas J. Hudson, Anne Sophie Sertier, Benedikt Brors, Sophia Derdak, Paul C. Boutros, Myron Peto, John Zhang, Philip Ginsbach

Publikováno v: Recercat. Dipósit de la Recerca de Catalunya
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Nature Communications

Financial support was provided by the consortium projects READNA under grant agreement FP7 Health-F4- 2008-201418, ESGI under grant agreement 262055, GEUVADIS under grant agreement 261123 of the European Commission Framework Programme 7, ICGC-CLL thr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c50ea0ec3ca8190514a6be077f87e3b
http://hdl.handle.net/2445/120214