Zobrazeno 1 - 10
of 56
pro vyhledávání: '"Rokhsar, Dan"'
Akademický článek
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Autor:
Keys, David N., Lee, Byung-in, Di Gregorio, Anna, Harafuji, Naoe, Detter, J. Chris, Wang, Mei, Kahsai, Orsalem, Ahn, Sylvia, Zhang, Cindy, Doyle, Sharon A., Satoh, Noriyuki, Satou, Yutaka, Saiga, Hidetoshi, Christian, Allen T., Rokhsar, Dan S., Hawkins, Trevor L., Levine, Mike, Richardson, Paul M.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2005 Jan . 102(3), 679-683.
Externí odkaz:
https://www.jstor.org/stable/3374308
Autor:
Dehal, Paramvir, Predki, Paul, Olsen, Anne S., Kobayashi, Art, Folta, Peg, Lucas, Susan, Land, Miriam, Terry, Astrid, Rash, Sam, Zhang, Qing, Gordon, Laurie, Kim, Joomyeong, Elkin, Christopher, Pollard, Martin J., Richardson, Paul, Rokhsar, Dan, Uberbacher, Ed, Hawkins, Trevor, Branscomb, Elbert, Stubbs, Lisa
Publikováno v:
Science, 2001 Jul 01. 293(5527), 104-111.
Externí odkaz:
https://www.jstor.org/stable/3084198
Akademický článek
Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.
K zobrazení výsledku je třeba se přihlásit.
Autor:
Martinez, Diego, Challacombe, Jean, Morgenstern, Ingo, Hibbett, David, Schmoll, Monika, Kubicek, Christian P., Ferreira, Patricia, Ruiz-Duenas, Francisco J., Martinez, Angel T., Kersten, Phil, Hammel, Kenneth E., Vanden Wymelenberg, Amber, Gaskell, Jill, Lindquist, Erika, Sabat, Grzegorz, BonDurant, Sandra Splinter, Larrondo, Luis F., Canessa, Paulo, Vicuna, Rafael, Yadav, Jagjit, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Pisabarro, Antonio G., Lavin, José L., Oguiza, José A., Master, Emma, Henrissat, Bernard, Coutinho, Pedro M., Harris, Paul, Magnuson, Jon Karl, Baker, Scott E., Bruno, Kenneth, Kenealy, William, Hoegger, Patrik J., Kües, Ursula, Ramaiya, Preethi, Lucas, Susan, Salamov, Asaf, Shapiro, Harris, Tu, Hank, Chee, Christine L., Misra, Monica, Xie, Gary, Teter, Sarah, Yaver, Debbie, James, Tim, Mokrejs, Martin, Pospisek, Martin, Grigoriev, Igor V., Brettin, Thomas, Rokhsar, Dan, Berka, Randy, Cullen, Dan, Dixon, Richard A.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2009 Feb 01. 106(6), 1954-1959.
Externí odkaz:
https://www.jstor.org/stable/40421704
Autor:
Opperman, Charles H., Bird, David M., Williamson, Valerie M., Rokhsar, Dan S., Burke, Mark, Cohn, Jonathan, Cromer, John, Diener, Steve, Gajan, Jim, Graham, Steve, Houfek, T. D., Liu, Qingli, Mitros, Therese, Schaff, Jennifer, Schaffer, Reenah, Scholl, Elizabeth, Sosinski, Bryon R., Thomas, Varghese P., Windham, Eric
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2008 Sep . 105(39), 14802-14807.
Externí odkaz:
https://www.jstor.org/stable/25464316
Autor:
Arkin, Adam, Bader, David C., Coffey, Richard, Antypas, Katie, Bard, Deborah, Dart, Eli, Dosanjh, Sudip, Gerber, Richard, Hack, James, Monga, Inder, Papka, Michael E., Riley, Katherine, Rotman, Lauren, Straatsma, Tjerk, Wells, Jack, Aluru, Srinivas, Andersen, Amity, Aprá, Edoardo, Azad, Ariful, Bates, Susan, Blaby, Ian, Blaby-Haas, Crysten, Bonneau, Rich, Bowen, Ben, Bradford, Mark A., Brodie, Eoin, Brown, James, Buluc, Aydin, Bernholdt, David, Bylaska, Eric, Calvin, Kate, Cannon, Bill, Chen, Xingyuan, Cheng, Xiaolin, Cheung, Margaret, Chowdhary, Kenny, Colella, Phillip, Collins, Bill, Compo, Gil, Crowley, Mike, Debusschere, Bert, D'Imperio, Nicholas, Dror, Ron, Egan, Rob, Evans, Katherine, Friedberg, Iddo, Fyke, Jeremy, Gao, Zheng, Georganas, Evangelos, Giraldo, Frank, Gnanakaran, Gnana, Govind, Niri, Grandy, Stuart, Gustafson, Bill, Hammond, Glenn, Hargrove, William, Heroux, Michael, Hoffman, Forrest, Hofmeyr, Steven, Hunke, Elizabeth, Jackson, Charles, Jacob, Rob, Jacobson, Dan, Jacobson, Matt, Jain, Chirag, Johansen, Hans, Johnson, Jeff, Jones, Andy, Jones, Phil, Kalyanaraman, Ananth, Kang, Senghwa, King, Eric, Koanantakool, Penporn, Kollias, Pavlos, Kopera, Michal, Kotamarthi, Rao, Kowalski, Karol, Kumar, Jitendra, Kyrpides, Nikos, Leung, Ruby, Li, Xiaolin, Lin, Wuyin, Link, Robert, Liu, Yangang, Loew, Leslie, Luke, Edward, Ma, Hsi -Yen, Mahadevan, Radhakrishnan, Maranas, Costas, Martin, Daniel, Maslowski, Wieslaw, McCue, Lee Ann, McInnes, Lois Curfman, Mills, Richard, Molins Rafa, Sergi, Morozov, Dmitriy, Mostafavi, Sara, Moulton, David J., Mourao, Zenaida, Najm, Habib, Ng, Bernard, Ng, Esmond, Norman, Matt, Oh, Sang -Yun, Oliker, Leonid, Pan, Chongle, Pass, Rebecca, Pau, George S. H., Petridis, Loukas, Prakash, Giri, Price, Stephen, Randall, David, Renslow, Ryan, Riihimaki, Laura, Ringler, Todd, Roberts, Andrew, Rokhsar, Dan, Ruebel, Oliver, Salinger, Andrew, Scheibe, Tim, Schulz, Roland, Sivaraman, Chitra, Smith, Jeremy, Sreepathi, Sarat, Steefel, Carl, Talbot, Jenifer, Tantillo, D. J., Tartakovsky, Alex, Taylor, Mark, Taylor, Ronald, Trebotich, David, Urban, Nathan, Valiev, Marat, Wagner, Allon, Wainwright, Haruko, Wieder, Will, Wiley, Steven, Williams, Dean, Worley, Pat, Xie, Shaocheng, Yelick, Kathy, Yoo, Shinjae, Yosef, Niri, Zhang, Minghua
The article of record as published may be found at http://dx.doi.org/10.2172/1375720 An Office of Science review sponsored jointly by Advanced Scientific Computing Research and Biological and Environmental Research, March 28-31, 2016, Rockville, Mary
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od______2778::274f1f83d73d2309ae04e390945a966e
https://hdl.handle.net/10945/57250
https://hdl.handle.net/10945/57250
Autor:
Vogel, John P, Garvin, David F, Mockler, Todd C, Schmutz, Jeremy, Rokhsar, Dan, Bevan, Michael W, Barry, Kerrie, Lucas, Susan, Harmon-Smith, Miranda, Lail, Kathleen, Tice, Hope, Schmutz Leader, Jeremy, Grimwood, Jane, McKenzie, Neil, Huo, Naxin, Gu, Yong Q, Lazo, Gerard R, Anderson, Olin D, Vogel Leader, John P, You, Frank M, Luo, Ming-Cheng, Dvorak, Jan, Wright, Jonathan, Febrer, Melanie, Idziak, Dominika, Hasterok, Robert, Lindquist, Erika, Wang, Mei, Fox, Samuel E, Priest, Henry D, Filichkin, Sergei A, Givan, Scott A, Bryant, Douglas W, Chang, Jeff H, Mockler Leader, Todd C, Wu, Haiyan, Wu, Wei, Hsia, An-Ping, Schnable, Patrick S, Kalyanaraman, Anantharaman, Barbazuk, Brad, Michael, Todd P, Hazen, Samuel P, Bragg, Jennifer N, Laudencia-Chingcuanco, Debbie, Weng, Yiqun, Haberer, Georg, Spannagl, Manuel, Mayer Leader, Klaus, Rattei, Thomas, Mitros, Therese, Lee, Sang-Jik, Rose, Jocelyn K. C, Mueller, Lukas A, York, Thomas L, Wicker Leader, Thomas, Buchmann, Jan P, Tanskanen, Jaakko, Schulman Leader, Alan H, Gundlach, Heidrun, Bevan, Michael, Costa de Oliveira, Antonio, da C. Maia, Luciano, Belknap, William, Jiang, Ning, Lai, Jinsheng, Zhu, Liucun, Ma, Jianxin, Sun, Cheng, Pritham, Ellen, Salse Leader, Jerome, Murat, Florent, Abrouk, Michael, Mayer, Klaus, Bruggmann, Remy, Messing, Joachim, Fahlgren, Noah, Sullivan, Christopher M, Carrington, James C, Chapman, Elisabeth J, May, Greg D, Zhai, Jixian, Ganssmann, Matthias, Guna Ranjan Gurazada, Sai, German, Marcelo, Meyers, Blake C, Green Leader, Pamela J, Tyler, Ludmila, Wu, Jiajie, Thomson, James, Chen, Shan, Scheller, Henrik V, Harholt, Jesper, Ulvskov, Peter, Kimbrel, Jeffrey A, Bartley, Laura E, Cao, Peijian, Jung, Ki-Hong, Sharma, Manoj K, Vega-Sanchez, Miguel, Ronald, Pamela, Dardick, Christopher D, De Bodt, Stefanie, Verelst, Wim, Inzé, Dirk, Heese, Maren, Schnittger, Arp, Yang, Xiaohan, Kalluri, Udaya C, Tuskan, Gerald A, Hua, Zhihua, Vierstra, Richard D, Cui, Yu, Ouyang, Shuhong, Sun, Qixin, Liu, Zhiyong, Yilmaz, Alper, Grotewold, Erich, Sibout, Richard, Hematy, Kian, Mouille, Gregory, Höfte, Herman, Michael, Todd, Pelloux, Jérome, OâConnor, Devin, Schnable, James, Rowe, Scott, Harmon, Frank, Cass, Cynthia L, Sedbrook, John C, Byrne, Mary E, Walsh, Sean, Higgins, Janet, Li, Pinghua, Brutnell, Thomas, Unver, Turgay, Budak, Hikmet, Belcram, Harry, Charles, Mathieu, Chalhoub, Boulos, Baxter, Ivan
Publikováno v:
Nature
Nature, Nature Publishing Group, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩
Nature, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩
Vogel, John P; Garvin, David F; Mockler, Todd C; Schmutz, Jeremy; Rokhsar, Dan; Bevan, Michael W; et al.(2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282), 763-768. doi: 10.1038/nature08747. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/0pd789wt
Nature, Nature Publishing Group, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩
Nature, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩
Vogel, John P; Garvin, David F; Mockler, Todd C; Schmutz, Jeremy; Rokhsar, Dan; Bevan, Michael W; et al.(2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282), 763-768. doi: 10.1038/nature08747. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/0pd789wt
Principal investigators John P. Vogel1, David F. Garvin2, Todd C. Mockler3, Jeremy Schmutz4, Dan Rokhsar5,6, Michael W. Bevan7; DNA sequencing and assembly Kerrie Barry5, Susan Lucas5, Miranda Harmon-Smith5, Kathleen Lail5, Hope Tice5, Jeremy Schmutz
Publikováno v:
Shu, Shengqiang; Rokhsar, Dan; Goodstein, David; Hayes, David; & Mitros, Therese. (2014). JGI Plant Genomics Gene Annotation Pipeline. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/8j463183
Plant genomes vary in size and are highly complex with a high amount of repeats, genome duplication and tandem duplication. Gene encodes a wealth of information useful in studying organism and it is critical to have high quality and stable gene annot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::618a2796aaa5b9c954385cab30b5112e
http://www.escholarship.org/uc/item/8j463183
http://www.escholarship.org/uc/item/8j463183
Publikováno v:
Shu, Shengqiang; Goodstein, David; & Rokhsar, Dan. (2013). PERTRAN: Genome-guided RNA-seq Read Assembler. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/7xf9n0wt
As short RNA-seq reads become a standard, affordable input to any genome annotation project, a sensitive and accurate transcript assembler is an essential part of any gene prediction system. PERTRAN is a pipeline for assembling transcripts from RNA-s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::d2ee6ac83e026ec4b613110067c2e3bd
http://www.escholarship.org/uc/item/7xf9n0wt
http://www.escholarship.org/uc/item/7xf9n0wt