Higher variability in the number of sexual partners in males can contribute to a higher prevalence of sexually transmitted diseases in females

Autor: Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen

Publikováno v: Journal of Theoretical Biology. 261:100-106

By examining published, empirical data we show that men and women consistently differ in the shape of the distribution of the number of sexual partners. The female distribution is always relatively narrow-variance is low-with a big majority of women

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9204051391e15a2de77e490805ca479d
https://doi.org/10.1016/j.jtbi.2009.06.028

InterMap3D: predicting and visualizing co-evolving protein residues

Autor: Peter Wad Sackett, Francisco S. Roque, Anders Gorm Pedersen, Anne Mølgaard, Thomas Sicheritz-Pontén, Rodrigo Gouveia-Oliveira, Rasmus Wernersson

Publikováno v: Bioinformatics. 25:1963-1965

Summary: InterMap3D predicts co-evolving protein residues and plots them on the 3D protein structure. Starting with a single protein sequence, InterMap3D automatically finds a set of homologous sequences, generates an alignment and fetches the most s

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c40e6785a0b12786fb586eb38e9ec9c3
https://doi.org/10.1093/bioinformatics/btp335

Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation

Autor: Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen

Publikováno v: Algorithms for Molecular Biology, Vol 2, Iss 1, p 12 (2007)
Algorithms for molecular biology : AMB

Background Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Our goal is to find these coevolving residues. Results We present six new

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c48f823c8d08c70f66ec76879f5218a1
http://www.almob.org/content/2/1/12

MaxAlign: maximizing usable data in an alignment

Autor: Anders Gorm Pedersen, Rodrigo Gouveia-Oliveira, Peter Wad Sackett

Publikováno v: Oliveira, R G, Sackett, P W & Pedersen, A G 2007, ' MaxAlign: maximizing usable data in an alignment ', BMC Bioinformatics, vol. 8, pp. 312 . https://doi.org/10.1186/1471-2105-8-312
BMC Bioinformatics
BMC Bioinformatics, Vol 8, Iss 1, p 312 (2007)

Background The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for instance, gapped columns are often discarded entirely from the alignment

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ac04739f1cd06baf38689ce513d86c6
https://orbit.dtu.dk/en/publications/bab4e073-5185-452d-bb96-8bf9a30e1bd4

Comparative evaluation of word composition distances for the recognition of SCOP relationships

Autor: Jonas S. Almeida, Rodrigo Gouveia-Oliveira, Susana Vinga

Publikováno v: Bioinformatics (Oxford, England). 20(2)

Motivation: Alignment-free metrics were recently reviewed by the authors, but have not until now been object of a comparative study. This paper compares the classification accuracy of word composition metrics therein reviewed. It also presents a new

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec55e3f47597c28549af692a6d0e7f97
https://pubmed.ncbi.nlm.nih.gov/14734312