Zobrazeno 1 - 10
of 49
pro vyhledávání: '"Robin Haw"'
Autor:
Colin Diesh, Garrett J Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A. Hershberg, Angel Leung, Emma Guo, Shihab Dider, Junjun Zhang, Caroline Bridge, Gregory Hogue, Andrew Duncan, Matthew Morgan, Tia Flores, Benjamin N. Bimber, Robin Haw, Scott Cain, Robert M. Buels, Lincoln D. Stein, Ian H. Holmes
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-21 (2023)
Abstract We present JBrowse 2, a general-purpose genome annotation browser offering enhanced visualization of complex structural variation and evolutionary relationships. It retains core features of JBrowse while adding new views for synteny, dotplot
Externí odkaz:
https://doaj.org/article/efddfafc48814f4c8935af0d7bbb2f29
Autor:
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, D A B Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff‐Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community
Publikováno v:
Molecular Systems Biology, Vol 17, Iss 12, Pp n/a-n/a (2021)
Externí odkaz:
https://doaj.org/article/5d30269056c148bf87fd8eb20e9f3e1c
Autor:
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Devasahayam Arokia Balaya Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff-Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community
Publikováno v:
Molecular Systems Biology, Vol 17, Iss 10, Pp n/a-n/a (2021)
Abstract We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS‐CoV‐2 infection, improving data interpretation and predicting key targets of intervention. Here, we describe
Externí odkaz:
https://doaj.org/article/07d2352966634fc58ef9a394d1092d67
Autor:
Anwesha Bohler, Guanming Wu, Martina Kutmon, Leontius Adhika Pradhana, Susan L Coort, Kristina Hanspers, Robin Haw, Alexander R Pico, Chris T Evelo
Publikováno v:
PLoS Computational Biology, Vol 12, Iss 5, p e1004941 (2016)
Reactome and WikiPathways are two of the most popular freely available databases for biological pathways. Reactome pathways are centrally curated with periodic input from selected domain experts. WikiPathways is a community-based platform where pathw
Externí odkaz:
https://doaj.org/article/24e6c2e679944f8ab0fcbdd5ef0d9bd2
Publikováno v:
F1000Research, Vol 3 (2014)
High-throughput experiments are routinely performed in modern biological studies. However, extracting meaningful results from massive experimental data sets is a challenging task for biologists. Projecting data onto pathway and network contexts is a
Externí odkaz:
https://doaj.org/article/40ebb42e7d9e4a81aa3e00d5fedf1808
Publikováno v:
PLoS ONE, Vol 9, Iss 5, p e97997 (2014)
Studies indicate that high-grade serous ovarian carcinoma (HGSOC), the most common epithelial ovarian carcinoma histotype, originates from the fallopian tube epithelium (FTE). Risk factors for this cancer include reproductive parameters associated wi
Externí odkaz:
https://doaj.org/article/0ec0db3de6b6476abe690f08c4d47e3e
Autor:
Karen Rothfels, Marija Milacic, Lisa Matthews, Robin Haw, Cristoffer Sevilla, Marc Gillespie, Ralf Stephan, Chuqiao Gong, Eliot Ragueneau, Bruce May, Veronica Shamovsky, Adam Wright, Joel Weiser, Deidre Beavers, Patrick Conley, Krishna Tiwari, Bijay Jassal, Johannes Griss, Andrea Senff‐Ribeiro, Timothy Brunson, Robert Petryszak, Henning Hermjakob, Peter D'Eustachio, Guanming Wu, Lincoln Stein
Publikováno v:
Current Protocols. 3
Autor:
Johannes Griss, Liam Beckman, Cristoffer Sevilla, Lisa Matthews, Solomon Shorser, Julieth Murillo, Chris Sander, Joel Weiser, Ralf Stephan, Konstantinos Sidiropoulos, Chuan Deng, Marija Milacic, Thawfeek M. Varusai, Veronica Shamovsky, Antonio Fabregat, Xiang Shao, Bruce May, Justin Cook, Robin Haw, Nasim Sanati, Emek Demir, Guanming Wu, Gary D. Bader, Karen Rothfels, Chuqiao Gong, Henning Hermjakob, Timothy Brunson, Peter D'Eustachio, Bijay Jassal, Andrea Senff-Ribeiro, Guilherme Viteri, Marc Gillespie, Lincoln Stein, Yusra Haider, Eliot Ragueneau
Publikováno v:
Nucleic Acids Research
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired dise
Autor:
Scott Cain, Robin Haw, Caroline Bridge, Junjun Zhang, Robert Buels, Colin Diesh, Garrett Stevens, Teresa Martinez, Peter K. Xie, Elliot Hershberg, Shihab Dider, Lincoln Stein, Ian Holmes
Publikováno v:
Cancer Research. 82:6400-6400
Introduction: Genome browsers are useful tools for research in human genetics, able to display and integrate biological information such as long and short read sequencing data, variant calls, and annotations. While traditional linear genome browsers
Autor:
Dezso Modos, Julia Scheel, Ralf Stephan, Piotr Gawron, Kristina Hanspers, Jean-Marie Ravel, Alexander Mazein, Corinna Montrone, Alberto Valdeolivas, Marek Ostaszewski, Susan L. Coort, Hiroaki Kitano, Tom C. Freeman, Vera Ortseifen, Vanessa Nakonecnij, M Orlic-Milacic, Jan Hasenauer, Veronica Shamovsky, Venkata P. Satagopam, Goar Frishman, M. Vazquez, D A B Rex, Miguel Ponce de Leon, Sylvain Soliman, Luana Licata, Ebru Kocakaya, Kinza Rian, Yusuke Hiki, Marton Olbei, Martina Kutmon, Bijay Jassal, Akira Funahashi, Lisa Matthews, Xiaoming Hu, Marcio Luis Acencio, Zsolt Bocskei, Robin Haw, Joaquín Dopazo, Agatha Treveil, Andrea Senff-Ribeiro, Tomáš Helikar, Chris T. Evelo, John A. Bachman, Julio Saez-Rodriguez, Takahiro G. Yamada, Emmanuel Barillot, Anton Yuryev, Bertrand De Meulder, Matti Hoch, Guanming Wu, Daniela Börnigen, Rudi Balling, Karen Rothfels, Pablo Porras, Hanna Borlinghaus, Andreas Dräger, Aurélien Naldi, Marta Iannuccelli, Leonard Schmiester, Dieter Maier, Jason E. Shoemaker, Valentin Grouès, Jakob Vanhoefer, Marius Rameil, Sara Sadat Aghamiri, Tobias Czauderna, Inna Kuperstein, Nhung Pham, Reinhard Schneider, Marina Esteban-Medina, Carole Goble, Benjamin M. Gyori, Emily E. Ackerman, Anita de Waard, Bhanwar Lal Puniya, Olaf Wolkenhauer, Alfonso Valencia, Julia Somers, Ewa Smula, Gisela Fobo, Robert Phair, Chris Sander, Laurent Heirendt, Carlos Vega, Jeremy Teuton, Emek Demir, Alina Renz, Tamas Korcsmaros, Vidisha Singh, Anastasia P. Nesterova, Andreas Ruepp, Lars M. T. Eijssen, Thawfeek M. Varusai, Aurelien Dugourd, Silvia Marchesi, Cristoffer Sevilla, Falk Schreiber, Barbara Brauner, Noriko Hiroi, Augustin Luna, Muying Wang, Shailendra K. Gupta, Egon Willighagen, Charles Auffray, Denise Slenter, Kristie L. Oxford, Franck Augé, Friederike Ehrhart, Muhammad Naveez, Stuart Owen, Arnau Montagud, Liam Fergusson, Enrico Glaab, Martin Golebiewski, Laurence Calzone, Alexander R. Pico, Dénes Türei, Marvin Martens, Henning Hermjakob, Rupert W. Overall, Jeremy Zucker, Özgün Babur, Gokce Yagmur Summak, Lincoln Stein, Anders Riutta, Anna Niarakis, Aurelio Orta-Resendiz, Francesca Sacco, Maria Peña-Chilet, Marta Conti, Jacques S. Beckmann, Angela Bauch
We describe a large-scale community effort to build an open-access, interoperable, and computable repository of COVID-19 molecular mechanisms - the COVID-19 Disease Map. We discuss the tools, platforms, and guidelines necessary for the distributed de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::072fd0730fda5cdbe9087ff60a56abe9
https://hal.archives-ouvertes.fr/hal-03151664/document
https://hal.archives-ouvertes.fr/hal-03151664/document