Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Robert T Yamamoto"'
Autor:
Paula King, Long K Pham, Shannon Waltz, Dan Sphar, Robert T Yamamoto, Douglas Conrad, Randy Taplitz, Francesca Torriani, R Allyn Forsyth
Publikováno v:
PLoS ONE, Vol 11, Iss 8, p e0160124 (2016)
We describe the sampling of sixty-three uncultured hospital air samples collected over a six-month period and analysis using shotgun metagenomic sequencing. Our primary goals were to determine the longitudinal metagenomic variability of this environm
Externí odkaz:
https://doaj.org/article/d38ee2d84ab246f6b67429e062285f09
Autor:
Guohong Liu, Christopher Q Weston, Long K Pham, Shannon Waltz, Helen Barnes, Paula King, Dan Sphar, Robert T Yamamoto, R Allyn Forsyth
Publikováno v:
PLoS ONE, Vol 11, Iss 1, p e0146064 (2016)
We describe continuing work to develop restriction endonucleases as tools to enrich targeted genomes of interest from diverse populations. Two approaches were developed in parallel to segregate genomic DNA based on cytosine methylation. First, the me
Externí odkaz:
https://doaj.org/article/32f679157d4e4f4b9fe604d53ad91ec9
Autor:
Paula King, Long K Pham, Shannon Waltz, Dan Sphar, Robert T Yamamoto, Douglas Conrad, Randy Taplitz, Francesca Torriani, R Allyn Forsyth
Publikováno v:
PLoS ONE, Vol 11, Iss 12, p e0169376 (2016)
[This corrects the article DOI: 10.1371/journal.pone.0160124.].
Externí odkaz:
https://doaj.org/article/1b1c659241614518811aa8cada294f80
Autor:
Helen E Barnes, Guohong Liu, Christopher Q Weston, Paula King, Long K Pham, Shannon Waltz, Kimberly T Helzer, Laura Day, Dan Sphar, Robert T Yamamoto, R Allyn Forsyth
Publikováno v:
PLoS ONE, Vol 9, Iss 10, p e109061 (2014)
To improve the metagenomic analysis of complex microbiomes, we have repurposed restriction endonucleases as methyl specific DNA binding proteins. As an example, we use DpnI immobilized on magnetic beads. The ten minute extraction technique allows spe
Externí odkaz:
https://doaj.org/article/f4589789518941dbb5e98d04134b80f0
Autor:
Helen E. Barnes, Paula King, Long K. Pham, Guohong Liu, R. Allyn Forsyth, Robert T. Yamamoto, Dan Sphar, Christopher Q. Weston, Shannon Waltz
Publikováno v:
PLoS ONE, Vol 11, Iss 1, p e0146064 (2016)
PLoS ONE
PLoS ONE
We describe continuing work to develop restriction endonucleases as tools to enrich targeted genomes of interest from diverse populations. Two approaches were developed in parallel to segregate genomic DNA based on cytosine methylation. First, the me
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8a722ee6de6d2b0eb92e6a9f7013a8b7
http://europepmc.org/articles/PMC4699840?pdf=render
http://europepmc.org/articles/PMC4699840?pdf=render
Autor:
Cheryl L. Malone, G C Kedar, Philip J. Youngman, Rich Archer, Melissa McCarthy, Jamie M. Froelich, Randy Maile, Robert T. Yamamoto, Robert Haselbeck, Amy Files, Daniel Wall, Carlos Zamudio, Terry Roemer, Liangsu Wang, John D. Trawick, Joe Patterson, R. Allyn Forsyth, Vickie Brown-Driver, Marshall Pilcher, Ian A. Taylor, David Robbins, Danny Nakaji, Molly Allen, H. Howard Xu, Paula King, Susan Sillaots
Publikováno v:
Antimicrobial Agents and Chemotherapy. 54:3659-3670
The widespread emergence of antibiotic-resistant bacteria and a lack of new pharmaceutical development have catalyzed a need for new and innovative approaches for antibiotic drug discovery. One bottleneck in antibiotic discovery is the lack of a rapi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ef24b11300e85697e329f0d477979d7
https://doi.org/10.1128/aac.00308-10
https://doi.org/10.1128/aac.00308-10
Autor:
Daniel Wall, Carlos Zamudio, David Robbins, G C Kedar, Judith W. Zyskind, Melissa McCarthy, J. Gordon Foulkes, Zhan-yang Zhu, Vickie Brown-Driver, Kari L. Ohlsen, Paula King, Zehui Tan, John D. Trawick, Jamie M. Froelich, Grant J. Carr, Brian Thomas Misiner, Robert Haselbeck, Cheryl L. Malone, H. Howard Xu, Liangsu Wang, Robert T. Yamamoto, Deborah A. Mosca, R. Allyn Forsyth
Publikováno v:
Molecular Microbiology. 43:1387-1400
Summary To address the need for new approaches to antibiotic drug development, we have identified a large number of essential genes for the bacterial pathogen, Staphylococcus aureus, using a rapid shotgun antisense RNA method. Staphylococcus aureus c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7246a51da87159b16267f8e63469ae1f
https://doi.org/10.1046/j.1365-2958.2002.02832.x
https://doi.org/10.1046/j.1365-2958.2002.02832.x
Autor:
Shannon Waltz, Douglas Conrad, R. Allyn Forsyth, Paula King, Dan Sphar, Robert T. Yamamoto, Randy Taplitz, Long K. Pham, Francesca J. Torriani
Publikováno v:
PLoS ONE, Vol 11, Iss 12, p e0169376 (2016)
PloS one, vol 11, iss 12
PloS one, vol 11, iss 12
The Materials and Methods section does not describe the ZovaSeq pipeline used to analyze the data in sufficient detail. The attached Supporting Information file provides additional information about the version of ZovaSeq used for King et al. 2016 [1
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24ceda11304d1dff92351e53eb196814
https://doi.org/10.1371/journal.pone.0169376
https://doi.org/10.1371/journal.pone.0169376
Autor:
Qun Zhu, Robert T. Yamamoto, Michael A. Lawton, Christopher J. Lamb, Arlyne A. Beeche, Tsegaye Dabi
Publikováno v:
Plant Molecular Biology. 29:535-550
Phenylalanine ammonia-lyase (PAL) genomic sequences were isolated from a rice (Oryza sativa L.) genomic library using a PCR-amplified rice PAL DNA fragment as a probe. There is a small family of PAL genes in the rice genome. The nucleotide sequence o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b944486a7f6bb9cb3690570b49b25db
https://doi.org/10.1007/bf00020983
https://doi.org/10.1007/bf00020983
Autor:
Long K. Pham, R. Allyn Forsyth, Robert T. Yamamoto, Douglas Conrad, Shannon Waltz, Randy Taplitz, Paula King, Francesca J. Torriani, Dan Sphar
Publikováno v:
PLoS ONE
PloS one, vol 11, iss 8
PLoS ONE, Vol 11, Iss 8, p e0160124 (2016)
PloS one, vol 11, iss 8
PLoS ONE, Vol 11, Iss 8, p e0160124 (2016)
We describe the sampling of sixty-three uncultured hospital air samples collected over a six-month period and analysis using shotgun metagenomic sequencing. Our primary goals were to determine the longitudinal metagenomic variability of this environm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85cd282818d81db0c41df2af8301203e
https://doi.org/10.1371/journal.pone.0160124
https://doi.org/10.1371/journal.pone.0160124