Zobrazeno 1 - 10
of 181
pro vyhledávání: '"Robert D. Finn"'
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)
Abstract Cyanobacteria are globally occurring photosynthetic bacteria notable for their contribution to primary production and production of toxins which have detrimental ecosystem impacts. Furthermore, cyanobacteria can form mutualistic symbiotic re
Externí odkaz:
https://doaj.org/article/990779845c814af0b2e14aaca60f5d05
Autor:
Gulnara Tagirdzhanova, Paul Saary, Ellen S Cameron, Carmen C G Allen, Arkadiy I Garber, David Díaz Escandón, Andrew T Cook, Spencer Goyette, Veera Tuovinen Nogerius, Alfredo Passo, Helmut Mayrhofer, Håkon Holien, Tor Tønsberg, Lisa Y Stein, Robert D Finn, Toby Spribille
Publikováno v:
PLoS Biology, Vol 22, Iss 11, p e3002862 (2024)
In lichen research, metagenomes are increasingly being used for evaluating symbiont composition and metabolic potential, but the overall content and limitations of these metagenomes have not been assessed. We reassembled over 400 publicly available m
Externí odkaz:
https://doaj.org/article/aa08fbd65f7e4388b6cb09d03f634a27
Autor:
Qiang Lin, Basil Britto Xavier, Blaise T. F. Alako, Alex L. Mitchell, Sahaya Glingston Rajakani, Youri Glupczynski, Robert D. Finn, Guy Cochrane, Surbhi Malhotra-Kumar
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-9 (2022)
An extensive metagenomic analysis investigates the global distribution of antimicrobial resistance genes over different biomes, which are primarily influenced by host genera and environment rather than geographic or anthropogenic factors.
Externí odkaz:
https://doaj.org/article/11bfa9c6a19f47d2951db728d26cb1dc
Autor:
Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina Sakharova, Manja Marz, Alejandro Reyes Muñoz, Martin Hölzer, Robert D Finn
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 8, p e1011422 (2023)
The study of viral communities has revealed the enormous diversity and impact these biological entities have on various ecosystems. These observations have sparked widespread interest in developing computational strategies that support the comprehens
Externí odkaz:
https://doaj.org/article/e1d8683e840c49e5a3bfa6198610a74e
Autor:
Fotis A. Baltoumas, Evangelos Karatzas, David Paez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos C. Kyrpides, Georgios A. Pavlopoulos
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Metagenomics has enabled accessing the genetic repertoire of natural microbial communities. Metagenome shotgun sequencing has become the method of choice for studying and classifying microorganisms from various environments. To this end, several meth
Externí odkaz:
https://doaj.org/article/f02d335b56704ff4a762c935e45990f2
Autor:
Choon K. Sim, Sara Saheb Kashaf, Apollo Stacy, Diana M. Proctor, Alexandre Almeida, Nicolas Bouladoux, Mark Chen, NISC Comparative Sequencing Program, Robert D. Finn, Yasmine Belkaid, Sean Conlan, Julia A. Segre
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-16 (2022)
Abstract Background The human intestinal microbiome is a complex community that contributes to host health and disease. In addition to normal microbiota, pathogens like carbapenem-resistant Enterobacteriaceae may be asymptomatically present. When the
Externí odkaz:
https://doaj.org/article/8196fd2b58d84f188446150d8089e555
Autor:
Blake A. Sweeney, David Hoksza, Eric P. Nawrocki, Carlos Eduardo Ribas, Fábio Madeira, Jamie J. Cannone, Robin Gutell, Aparna Maddala, Caeden D. Meade, Loren Dean Williams, Anton S. Petrov, Patricia P. Chan, Todd M. Lowe, Robert D. Finn, Anton I. Petrov
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Non-coding RNA function is poorly understood, partly due to the challenge of determining RNA secondary (2D) structure. Here, the authors present a framework for the reproducible prediction and visualization of the 2D structure of a wide array of RNAs
Externí odkaz:
https://doaj.org/article/08c55853e54b4060954e1a43ffedc3a6
Autor:
Denise M. O’Sullivan, Ronan M. Doyle, Sasithon Temisak, Nicholas Redshaw, Alexandra S. Whale, Grace Logan, Jiabin Huang, Nicole Fischer, Gregory C. A. Amos, Mark D. Preston, Julian R. Marchesi, Josef Wagner, Julian Parkhill, Yair Motro, Hubert Denise, Robert D. Finn, Kathryn A. Harris, Gemma L. Kay, Justin O’Grady, Emma Ransom-Jones, Huihai Wu, Emma Laing, David J. Studholme, Ernest Diez Benavente, Jody Phelan, Taane G. Clark, Jacob Moran-Gilad, Jim F. Huggett
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)
Abstract Despite the advent of whole genome metagenomics, targeted approaches (such as 16S rRNA gene amplicon sequencing) continue to be valuable for determining the microbial composition of samples. Amplicon microbiome sequencing can be performed on
Externí odkaz:
https://doaj.org/article/8468c62cda324455a0cd7a1fb1c847ee
Autor:
Chiara Vanni, Matthew S Schechter, Silvia G Acinas, Albert Barberán, Pier Luigi Buttigieg, Emilio O Casamayor, Tom O Delmont, Carlos M Duarte, A Murat Eren, Robert D Finn, Renzo Kottmann, Alex Mitchell, Pablo Sánchez, Kimmo Siren, Martin Steinegger, Frank Oliver Gloeckner, Antonio Fernàndez-Guerra
Publikováno v:
eLife, Vol 11 (2022)
Genes of unknown function are among the biggest challenges in molecular biology, especially in microbial systems, where 40–60% of the predicted genes are unknown. Despite previous attempts, systematic approaches to include the unknown fraction into
Externí odkaz:
https://doaj.org/article/097108438cc24a7e974918ea90ebc056
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-21 (2020)
Abstract Microbial eukaryotes constitute a significant fraction of biodiversity and have recently gained more attention, but the recovery of high-quality metagenomic assembled eukaryotic genomes is limited by the current availability of tools. To hel
Externí odkaz:
https://doaj.org/article/facbd762ef93499fa1996efbe2ae0488