Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Robert Buels"'
Publikováno v:
PLoS Computational Biology, Vol 16, Iss 8, p e1007261 (2020)
We describe JBrowse Connect, an optional expansion to the JBrowse genome browser, targeted at developers. JBrowse Connect allows live messaging, notifications for new annotation tracks, heavy-duty analyses initiated by the user from within the browse
Externí odkaz:
https://doaj.org/article/29c8301d40cb4631bb498cb25fbc654c
Autor:
Lukas A. Mueller, René Klein Lankhorst, Steven D. Tanksley, James J. Giovannoni, Ruth White, Julia Vrebalov, Zhangjun Fei, Joyce van Eck, Robert Buels, Adri A. Mills, Naama Menda, Isaak Y. Tecle, Aureliano Bombarely, Stephen Stack, Suzanne M. Royer, Song-Bin Chang, Lindsay A. Shearer, Byung Dong Kim, Sung-Hwan Jo, Cheol-Goo Hur, Doil Choi, Chang-Bao Li, Jiuhai Zhao, Hongling Jiang, Yu Geng, Yuanyuan Dai, Huajie Fan, Jinfeng Chen, Fei Lu, Jinfeng Shi, Shouhong Sun, Jianjun Chen, Xiaohua Yang, Chen Lu, Mingsheng Chen, Zhukuan Cheng, Chuanyou Li, Hongqing Ling, Yongbiao Xue, Ying Wang, Graham B. Seymour, Gerard J. Bishop, Glenn Bryan, Jane Rogers, Sarah Sims, Sarah Butcher, Daniel Buchan, James Abbott, Helen Beasley, Christine Nicholson, Clare Riddle, Sean Humphray, Karen McLaren, Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, Paramjit Khurana, Jitendra P. Khurana, Akhilesh Tyagi, Sarita, Parul Chowdhury, Smriti Shridhar, Debasis Chattopadhyay, Awadhesh Pandit, Pradeep Singh, Ajay Kumar, Rekha Dixit, Archana Singh, Sumera Praveen, Vivek Dalal, Mahavir Yadav, Irfan Ahmad Ghazi, Kishor Gaikwad, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh, Dóra Szinay, Hans de Jong, Sander Peters, Marjo van Staveren, Erwin Datema, Mark W.E.J. Fiers, Roeland C.H.J. van Ham, P. Lindhout, Murielle Philippot, Pierre Frasse, Farid Regad, Mohamed Zouine, Mondher Bouzayen, Erika Asamizu, Shusei Sato, Hiroyuki Fukuoka, Satoshi Tabata, Daisuke Shibata, Miguel A. Botella, M. Perez-Alonso, V. Fernandez-Pedrosa, Sonia Osorio, Amparo Mico, Antonio Granell, Zhonghua Zhang, Jun He, Sanwen Huang, Yongchen Du, Dongyu Qu, Longfei Liu, Dongyuan Liu, Jun Wang, Zhibiao Ye, Wencai Yang, Guoping Wang, Alessandro Vezzi, Sara Todesco, Giorgio Valle, Giulia Falcone, Marco Pietrella, Giovanni Giuliano, Silvana Grandillo, Alessandra Traini, Nunzio D'Agostino, Maria Luisa Chiusano, Mara Ercolano, Amalia Barone, Luigi Frusciante, Heiko Schoof, Anika Jöcker, Rémy Bruggmann, Manuel Spannagl, Klaus X.F. Mayer, Roderic Guigó, Francisco Camara, Stephane Rombauts, Jeffrey A. Fawcett, Yves Van de Peer, Sandra Knapp, Dani Zamir, Willem Stiekema
Publikováno v:
The Plant Genome, Vol 2, Iss 1, Pp 78-92 (2009)
The genome of tomato ( L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanac
Externí odkaz:
https://doaj.org/article/1858359b6c874685a9198d615b63ad63
Autor:
Scott Cain, Robin Haw, Caroline Bridge, Junjun Zhang, Robert Buels, Colin Diesh, Garrett Stevens, Teresa Martinez, Peter K. Xie, Elliot Hershberg, Shihab Dider, Lincoln Stein, Ian Holmes
Publikováno v:
Cancer Research. 82:6400-6400
Introduction: Genome browsers are useful tools for research in human genetics, able to display and integrate biological information such as long and short read sequencing data, variant calls, and annotations. While traditional linear genome browsers
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a2a33d9766d9c30b18beaf80936044df
https://doi.org/10.1158/1538-7445.am2022-6400
https://doi.org/10.1158/1538-7445.am2022-6400
Autor:
Ian Holmes, Robert Buels, Lincoln Stein, Colin Diesh, Peter Xie, Garrett Stevens, Teresa De Jesus Martinez, Elliot A. Hershberg
Publikováno v:
Bioinformatics
Motivation Genome browsers are an essential tool in genome analysis. Modern genome browsers enable complex and interactive visualization of a wide variety of genomic data modalities. While such browsers are very powerful, they can be challenging to c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::665b8a56abdc5de9c36420ec323f03c5
http://europepmc.org/articles/PMC8570803
http://europepmc.org/articles/PMC8570803
JBrowse and Apollo: Tools for Genome Visualization and Annotation https://github.com/GMOD/jbrowse https://github.com/GMOD/Apollo JBrowse 2: https://github.com/GMOD/jbrowse-components
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de509c1d1920ee3e74b8be0ffa8deab7
Publikováno v:
Bioinformatics
Motivation The CRAM format addresses rising DNA storage costs for short-read sequencing by aligning reads to a reference genome and encoding the resulting alignment with Huffman, subexponential, Elias gamma, rANS, gzip and other codes. The CRAM codec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::687c7cd2bee01847df03707d7fcbf532
https://doi.org/10.1093/bioinformatics/btz384
https://doi.org/10.1093/bioinformatics/btz384
Autor:
Akira R. Kinjo, Tatsuya Kushida, Hiroshi Mori, Shuichi Kawashima, Mark Wilkinson, Takeshi Kawashima, Mark Thompson, Leyla Garcia, Shin Kawano, Kazuharu Arakawa, Shujiro Okuda, Jerven Bolleman, Shinobu Okamoto, Toshihisa Takagi, Yusuke Komiyama, Emi Hattori, Hiroyo Nishide, Jin-Dong Kim, Toshiaki Tokimatsu, Kiyoko F. Aoki-Kinoshita, Tazro Ohta, Francesco Strozzi, Toshiaki Katayama, Daisuke Shinmachi, Karin Verspoor, Masaaki Kotera, Matthew Paul Campbell, Shinya Suzuki, Yue Wang, Katsuhiko Murakami, Simon Jupp, Sarala M. Wimalaratne, Issaku Yamada, Erick Antezana, Atsuko Yamaguchi, Kotone Itaya, Masaki Banno, Hirokazu Chiba, Alex Kalderimis, Joachim Baran, Andrea Splendiani, Masayuki Yarimizu, Soichi Ogishima, Yuki Moriya, Hongyan Wu, Robert Hoehndorf, Maori Ito, Toyofumi Fujiwara, Masaaki Matsubara, Gos Micklem, Peter J. A. Cock, Fumihiro Kato, Jesualdo Tomás Fernández-Breis, Yasunori Yamamoto, Takatomo Fujisawa, Hidemasa Bono, Takeru Nakazato, Yasset Perez-Riverol, Yosuke Nishimura, Junichi Takehara, Hiromasa Ono, Sayaka Mizutani, Nozomi Yamamoto, James Malone, Michel Dumontier, Simon Kocbek, Hideya Kawaji, Robert Buels, Pascale Gaudet, Shoko Kawamoto, Kevin Bretonnel Cohen, Daniel G. Jamieson, Ikuo Uchiyama, Nick Juty, Raoul J. P. Bonnal, Satoshi Mizuno
Publikováno v:
F1000Research. 8:1677
Publishing databases in the Resource Description Framework (RDF) model is becoming widely accepted to maximize the syntactic and semantic interoperability of open data in life sciences. Here we report advancements made in the 6th and 7th annual BioHa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e4bd1aa743151a92ccac41879dc38646
https://doi.org/10.12688/f1000research.18238.1
https://doi.org/10.12688/f1000research.18238.1
Autor:
Robert Buels, Dave Clements
Publikováno v:
Nature Precedings
The Generic Model Organism Database (GMOD, "http://gmod.org":http://gmod.org) project provides interoperable, open source software tools for managing, visualizing and annotating biological data. GMOD is also a community of people addressing common ch
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______984::88d61bee95d94de86e8fc75341cf6c78
http://precedings.nature.com/documents/4611/version/1
http://precedings.nature.com/documents/4611/version/1
Publikováno v:
Nature Precedings.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d25a8892e47601f2fb65aa30f929c2bd
https://doi.org/10.1038/npre.2009.3160
https://doi.org/10.1038/npre.2009.3160
Autor:
Naama Menda, Isaak Tecle, Anuradha Pujar, Aureliano Bombarely, Tom York, Adri Mills, Joseph Gosselin, Robert Buels, Lukas Mueller
Publikováno v:
Nature Precedings.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::005a514ec4394900cdec4d79f81b791d
https://doi.org/10.1038/npre.2009.3134
https://doi.org/10.1038/npre.2009.3134