Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Robert Aboukhalil"'
Autor:
Larry Xi, Alexander Belyaev, Sandra Spurgeon, Xiaohui Wang, Haibiao Gong, Robert Aboukhalil, Richard Fekete
Publikováno v:
PLoS ONE, Vol 12, Iss 7, p e0181163 (2017)
A central challenge in sequencing single-cell genomes is the accurate determination of point mutations, phasing of these mutations, and identifying copy number variations with few assumptions. Ideally, this is accomplished under as low sequencing cov
Externí odkaz:
https://doaj.org/article/4690d3971ae04f1f95d9df577fbd04a1
Autor:
Alexander Krasnitz, Michael Wigler, James Hicks, Herbert Lepor, Lloyd C. Trotman, Gurinder Atwal, Brian Robinson, Shalini S. Yadav, Siobhan Gruschow, Abhishek Srivastava, Elton Llukani, Juliana Laze, Dawid G. Nowak, Inessa Hakker, Hilary Cox, Michael Riggs, Lubomir Chobardjiev, Guoli Sun, Asya Stepansky, Dan Levy, Robert Aboukhalil, Linda Rodgers, Jean McIndoo, Jude Kendall, Joan Alexander
Summary of downsampling study
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17b90e9d98bd16d082d42ce320dc0531
https://doi.org/10.1158/0008-5472.22417632.v1
https://doi.org/10.1158/0008-5472.22417632.v1
Autor:
Alexander Krasnitz, Michael Wigler, James Hicks, Herbert Lepor, Lloyd C. Trotman, Gurinder Atwal, Brian Robinson, Shalini S. Yadav, Siobhan Gruschow, Abhishek Srivastava, Elton Llukani, Juliana Laze, Dawid G. Nowak, Inessa Hakker, Hilary Cox, Michael Riggs, Lubomir Chobardjiev, Guoli Sun, Asya Stepansky, Dan Levy, Robert Aboukhalil, Linda Rodgers, Jean McIndoo, Jude Kendall, Joan Alexander
A distinction between indolent and aggressive disease is a major challenge in diagnostics of prostate cancer. As genetic heterogeneity and complexity may influence clinical outcome, we have initiated studies on single tumor cell genomics. In this stu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0825d02064561e7384a09d17d723523f
https://doi.org/10.1158/0008-5472.c.6509898.v1
https://doi.org/10.1158/0008-5472.c.6509898.v1
Autor:
Alexander Krasnitz, Michael Wigler, James Hicks, Herbert Lepor, Lloyd C. Trotman, Gurinder Atwal, Brian Robinson, Shalini S. Yadav, Siobhan Gruschow, Abhishek Srivastava, Elton Llukani, Juliana Laze, Dawid G. Nowak, Inessa Hakker, Hilary Cox, Michael Riggs, Lubomir Chobardjiev, Guoli Sun, Asya Stepansky, Dan Levy, Robert Aboukhalil, Linda Rodgers, Jean McIndoo, Jude Kendall, Joan Alexander
A PDF file containing Supplementary case reports
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::595e3a79f42024e6afccafcf6b102662
https://doi.org/10.1158/0008-5472.22417626.v1
https://doi.org/10.1158/0008-5472.22417626.v1
Publikováno v:
Bioinformatics
Summary Ribbon is an alignment visualization tool that shows how alignments are positioned within both the reference and read contexts, giving an intuitive view that enables a better understanding of structural variants and the read evidence supporti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c1c3154e5f03f22d5335d694b5a24db4
https://europepmc.org/articles/PMC8058763/
https://europepmc.org/articles/PMC8058763/
Autor:
James W. Hicks, Inessa Hakker, Gurinder S. Atwal, Jude Kendall, Joan Alexander, Linda Rodgers, Lubomir Chobardjiev, Shalini S. Yadav, Dan Levy, Robert Aboukhalil, Asya Stepansky, Lloyd C. Trotman, Brian D. Robinson, Michael Wigler, Abhishek Kumar Srivastava, Michael Riggs, Elton Llukani, Alexander Krasnitz, Juliana Laze, Siobhan Gruschow, Herbert Lepor, Jean McIndoo, Guoli Sun, Hilary Cox, Dawid G. Nowak
Publikováno v:
Cancer Research. 78:348-358
A distinction between indolent and aggressive disease is a major challenge in diagnostics of prostate cancer. As genetic heterogeneity and complexity may influence clinical outcome, we have initiated studies on single tumor cell genomics. In this stu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2aa8d57485a99210baf0d0374e2af08e
https://doi.org/10.1158/0008-5472.can-17-1138
https://doi.org/10.1158/0008-5472.can-17-1138
Autor:
Richard Fekete, Xiaohui Wang, Robert Aboukhalil, Haibiao Gong, Sandra Spurgeon, Larry Xi, Alexander Belyaev
Publikováno v:
PLoS ONE, Vol 12, Iss 7, p e0181163 (2017)
PLoS ONE
PLoS ONE
A central challenge in sequencing single-cell genomes is the accurate determination of point mutations, phasing of these mutations, and identifying copy number variations with few assumptions. Ideally, this is accomplished under as low sequencing cov
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0704ee26dc1880ca391197d4d3156ca
http://europepmc.org/articles/PMC5517011?pdf=render
http://europepmc.org/articles/PMC5517011?pdf=render
Autor:
James W. Hicks, Timour Baslan, Michael Wigler, Robert Aboukhalil, Michael C. Schatz, Gurinder S. Atwal, Jude Kendall, Tyler Garvin
Publikováno v:
Nature methods
We present an open-source web platform, Ginkgo (http://qb.cshl.edu/ginkgo), for the analysis and assessment of single-cell copy-number variations (CNVs). Ginkgo automatically constructs copy-number profiles of cells from mapped reads and constructs p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c8e09e2d2bb627d9085b9aa4a1d5651d
https://doi.org/10.1038/nmeth.3578
https://doi.org/10.1038/nmeth.3578
Autor:
Robert Aboukhalil
Publikováno v:
XRDS: Crossroads, The ACM Magazine for Students. 19:52-55
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bf8725bea8701b407428b4cfa3e44524
https://doi.org/10.1145/2460436.2460455
https://doi.org/10.1145/2460436.2460455
Publikováno v:
Canadian Journal of Chemistry. 89:385-394
Fluorescent nanoparticles were prepared via adsorption of the conjugated polyelectrolyte poly[5-methoxy-2-(3-sulfopropoxy)-1,4-phenylenevinylene] (MPS-PPV) onto 50 and 100 nm aminosilane functionalized silica beads. The particles were investigated vi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c2cee080628f29889b889eac1e06b9e7
https://doi.org/10.1139/v10-141
https://doi.org/10.1139/v10-141