Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Robert A. Player"'
Autor:
Robert A. Player, Angeline M. Aguinaldo, Brian B. Merritt, Lisa N. Maszkiewicz, Oluwaferanmi E. Adeyemo, Ellen R. Forsyth, Kathleen J. Verratti, Brant W. Chee, Sarah L. Grady, Christopher E. Bradburne
Publikováno v:
Frontiers in Bioinformatics, Vol 2 (2023)
A major challenge in the field of metagenomics is the selection of the correct combination of sequencing platform and downstream metagenomic analysis algorithm, or “classifier”. Here, we present the Metagenomic Evaluation Tool Analyzer (META), wh
Externí odkaz:
https://doaj.org/article/6b33a67f56b842d08b5c9e4c7c32a6b4
Autor:
Peter M. Thielen, Amanda L. Pendleton, Robert A. Player, Kenneth V. Bowden, Thomas J. Lawton, Jennifer H. Wisecaver
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 10, Pp 3467-3478 (2020)
Setaria viridis (green foxtail) is an important model system for improving cereal crops due to its diploid genome, ease of cultivation, and use of C4 photosynthesis. The S. viridis accession ME034V is exceptionally transformable, but the lack of a se
Externí odkaz:
https://doaj.org/article/fc8cddbf70b84fe88b7868234bc17d89
Autor:
J Philip Karl, Nicholes J Armstrong, Robert A Player, Jennifer C Rood, Jason W Soares, Holly L McClung
Publikováno v:
The Journal of Nutrition. 152:2343-2357
Autor:
J Philip, Karl, Nicholes J, Armstrong, Robert A, Player, Jennifer C, Rood, Jason W, Soares, Holly L, McClung
Publikováno v:
The Journal of nutrition.
Food processing alters diet digestibility and composition, thereby influencing interactions between host biology, diet, and the gut microbiota. The fecal metabolome offers insight into those relationships by providing a readout of diet-microbiota int
Autor:
Kenneth V Bowden, Robert A. Player, Amanda L. Pendleton, Jennifer H. Wisecaver, Peter Thielen, Thomas J. Lawton
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 10, Pp 3467-3478 (2020)
Setaria viridis (green foxtail) is an important model system for improving cereal crops due to its diploid genome, ease of cultivation, and use of C4 photosynthesis. The S. viridis accession ME034V is exceptionally transformable, but the lack of a se
Autor:
Sarah L. Grady, Bruce G. Goodwin, Kathleen Verratti, Christopher G. Earnhart, Robert A. Player, Shanmuga Sozhamannan, Linda Beck
Publikováno v:
Microbiology Resource Announcements
The genome of Francisella tularensis live vaccine strain NR-28537 was sequenced by a hybrid approach utilizing an Oxford Nanopore Technologies R9 flow cell and an Illumina MiSeq platform. De novo assembly of the resulting long and short reads produce
Autor:
Alan F. Scott, Christopher E. Bradburne, Kathleen J. Verratti, Robert A. Player, David Mohr, Ellen R. Forsyth
Reference genome fidelity is critically important for genome wide association studies (GWAS), yet many are incomplete or too dissimilar from the study population. A typical whole genome sequencing approach implies short-read technologies resulting in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b525336baff2787a92f85b2e0c817b04
https://doi.org/10.1101/2020.08.26.269076
https://doi.org/10.1101/2020.08.26.269076
Autor:
Kenneth Racicot, Jennifer Rood, Jason W. Soares, Nicholes J. Armstrong, Holly L. McClung, Robert A. Player, Scott J. Montain, J. Philip Karl
Publikováno v:
The Journal of nutritional biochemistry. 72
Interactions between gut microbes and dietary components modulate intestinal permeability (IP) and inflammation. Recent studies have reported altered fecal microbiota composition together with increased IP and inflammation in individuals consuming mi
Autor:
Christopher E. Bradburne, Ellen R Forsyth, Alan F. Scott, Robert A. Player, David Mohr, Kathleen Verratti
Publikováno v:
Life Science Alliance
This paper describes the economical optimization of DNA extraction, short and long read sequencing, and bioinformatic assembly, which in turn improves mapping and variant resolution of short-read sequenced, same-breed dogs for association studies. Th
Autor:
Emad M. Elassal, Shannon Wood, Jason W. Bennett, Robert A. Player, Carey D. Schlett, Ellen R Forsyth, Eugene V. Millar, David R. Tribble, Michael W. Ellis, Kathleen Verratti
Publikováno v:
Open Forum Infectious Diseases
Background Skin and soft-tissue infections (SSTI) are common among military recruits, and some experience recurrent SSTI (two infections ≥30 days apart) during training. We used whole-genome sequencing (WGS) to assess the relatedness of strains fro