Functional annotation and meta-analysis of maize transcriptomes reveal genes involved in biotic and abiotic stress

Autor: Rita K Hayford, Olivia C Haley, Ethalinda K Cannon, John L Portwood, Jack M Gardiner, Carson M Andorf, Margaret R Woodhouse

Publikováno v: BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)

Abstract Background Environmental stress factors, such as biotic and abiotic stress, are becoming more common due to climate variability, significantly affecting global maize yield. Transcriptome profiling studies provide insights into the molecular

Externí odkaz: https://doaj.org/article/802466f5e32a471eb5f4a9fb37411d24

Maize protein structure resources at the maize genetics and genomics database

Autor: Margaret R Woodhouse, John L Portwood, Shatabdi Sen, Rita K Hayford, Jack M Gardiner, Ethalinda K Cannon, Lisa C Harper, Carson M Andorf

Publikováno v: GENETICS. 224

Protein structures play an important role in bioinformatics, such as in predicting gene function or validating gene model annotation. However, determining protein structure was, until now, costly and time-consuming, which resulted in a structural bio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::b44b684fc7ac8719b3798fd250e4ea8a
https://doi.org/10.1093/genetics/iyad016

Characterization and Expression Analysis of Common BeanHistone Deacetylase 6during Development and Cold Stress Response

Autor: Venu Kalavacharla, Kalpalatha Melmaiee, Mayavan Subramani, Adrianne Brown, Rita K. Hayford, Ayalew Ligaba-Osena, Khwaja Hossain

Publikováno v: International Journal of Genomics, Vol 2017 (2017)

Histone deacetylases (HDACs) are important regulators of gene transcription thus controlling multiple cellular processes. Despite its essential role in plants,HDA6is yet to be validated in common bean. In this study, we show thatHDA6is involved in pl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34a102683d0a55e48f4c6188a5919240
https://doi.org/10.1155/2017/2502691

Contributors

Autor: Nobuyoshi Akimitsu, Juliana Almeida, Anthony Au, Vasudevan Ayyappan, J. Armando Casas-Mollano, Frances A. Champagne, Taiping Chen, Ravindresh Chhabra, Tian Chi, James P. Curley, Gary L. Dunbar, Mollee C. Dworkin, Thomas Eggermann, Felice Elefant, Hodaka Fujii, Toshitsugu Fujita, Krutika S. Gaonkar, Steffen Gay, Linn Gillberg, Naoko Hattori, Kimberly E. Hawkins, Rita K. Hayford, Zdenko Herceg, Line Hjort, Xiaotong Hu, Eveline M. Ibeagha-Awemu, Ali Jawaid, Astrid Jüngel, Venu (Kal) Kalavacharla, Ashley M. Karnay, Loo Keat Wei, Hasan Khatib, Kerstin Klein, Eloïse A. Kremer, Ilkka Kronholm, Hervé Lalucque, Ho-Sun Lee, Yongqin Li, Bo Liu, Shuiping Liu, Chiao-Ling Lo, Hanna Maciejewska-Rodrigues, Frédérique Magdinier, Panchanan Maiti, Fabienne Malagnac, Isabelle M. Mansuy, Shaoshuai Mao, J. Alfredo Martinez, Rahia Mashoodh, Fermin I. Milagro, Rena Mizutani, Shiraz Mujtaba, Pamela N. Munster, Rabih Murr, Rūta Navakauskienė, Tinh-Suong Nguyen, Chris O’Neill, Ifeanyi Okpala, Martin-Joseph Okpala, Zimuzoh Orakwue, Jeenah Park, Jacob Peedicayil, Gerd P. Pfeifer, Vincenzo Pirrotta, Tibor A. Rauch, Marisol Resendiz, Jérôme D. Robin, Julien Rossignol, Richard Saffery, Axel Schumacher, Michael I. Shifman, Philippe Silar, Athena Sklias, Susan L. Slager, Kjetil Søreide, Bhairavi Srinageshwar, Mayavan Subramani, J. David Sweatt, Moshe Szyf, Manuela Terranova-Barberio, Scott Thomas, Shulan Tian, Trygve O. Tollefsbol, Toshikazu Ushijima, Ludovica Vanzan, Nicolas Veland, Günter Vogt, Regan Vryer, Martin M. Watson, Toshimichi Yamada, Huihuang Yan, Ericka Zacarias, Allison Y. Zhong, Feng C. Zhou

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::1d68cbd66c6b3838223b3cbb7f738e72
https://doi.org/10.1016/b978-0-12-805388-1.00046-8

Functional annotation and meta-analysis of maize transcriptomes reveal genes involved in biotic and abiotic stress.

Autor: Hayford, Rita K¹ (AUTHOR) rita.hayford@usda.gov, Haley, Olivia C¹ (AUTHOR), Cannon, Ethalinda K¹ (AUTHOR), Portwood II, John L¹ (AUTHOR), Gardiner, Jack M² (AUTHOR), Andorf, Carson M^1,3 (AUTHOR) carson.andorf@usda.gov, Woodhouse, Margaret R¹ (AUTHOR) margaret.woodhouse@usda.gov

Publikováno v: BMC Genomics. 5/30/2024, Vol. 25 Issue 1, p1-16. 16p.