Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Rishi Matadeen"'
Autor:
Pavel Afanasyev, Charlotte Seer-Linnemayr, Raimond B. G. Ravelli, Rishi Matadeen, Sacha De Carlo, Bart Alewijnse, Rodrigo V. Portugal, Navraj S. Pannu, Michael Schatz, Marin van Heel
Publikováno v:
IUCrJ, Vol 4, Iss 5, Pp 678-694 (2017)
Single-particle cryogenic electron microscopy (cryo-EM) can now yield near-atomic resolution structures of biological complexes. However, the reference-based alignment algorithms commonly used in cryo-EM suffer from reference bias, limiting their app
Externí odkaz:
https://doaj.org/article/84b5977dcdf0496880072bec08d4db4e
Autor:
Shabih Shakeel, Brenda M. Westerhuis, Ausra Domanska, Roman I. Koning, Rishi Matadeen, Abraham J. Koster, Arjen Q. Bakker, Tim Beaumont, Katja C. Wolthers, Sarah J. Butcher
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-8 (2016)
Human parechovirus 3 (HPeV3) can cause severe central nervous system infections and is a major cause of neonatal sepsis. Here the authors determine the structure of HPeV3 that provides a high-resolution view of the capsid’s organization and shows m
Externí odkaz:
https://doaj.org/article/e58aa9263cc74ca2b1ca9f27740a4a8d
Publikováno v:
Acta Crystallographica. Section D, Structural Biology
The setup and operation of an industrial cryo-EM laboratory is described.
Cryo-electron microscopy (cryo-EM) has rapidly expanded with the introduction of direct electron detectors, improved image-processing software and automated image acquisit
Cryo-electron microscopy (cryo-EM) has rapidly expanded with the introduction of direct electron detectors, improved image-processing software and automated image acquisit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c6f5b00b14b61b65ccd8847670a9fd7
https://doi.org/10.1107/s2059798320002223
https://doi.org/10.1107/s2059798320002223
Autor:
Michael Schatz, S. de Carlo, Navraj S. Pannu, Pavel Afanasyev, M. van Heel, C. Seer-Linnemayr, Rishi Matadeen, Raimond B. G. Ravelli, B. Alewijnse, Rodrigo Villares Portugal
Publikováno v:
IUCrJ
IUCRJ
IUCRJ, 4, 678-694
IUCrJ, 4, 678-694. International Union of Crystallography
IUCrJ, Vol 4, Iss 5, Pp 678-694 (2017)
IUCRJ
IUCRJ, 4, 678-694
IUCrJ, 4, 678-694. International Union of Crystallography
IUCrJ, Vol 4, Iss 5, Pp 678-694 (2017)
An efficient and fast pipeline is presented for obtaining near-atomic resolution structures from large single-particle cryo-EM data sets. The approach is virtually reference-free and is therefore less prone to the perils of reference bias.
Singl
Singl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3cdcc0687552c385f2332422462caf87
http://europepmc.org/articles/PMC5619859
http://europepmc.org/articles/PMC5619859
Autor:
Ludovic Renault, Paul Lesbats, Alessandro Costa, Peter Cherepanov, Erik Serrao, Alan Engelman, Daniel P. Maskell, Dirk Lindemann, Stephen Hare, Rishi Matadeen
Publikováno v:
Nature
Retroviral integration is catalyzed by a tetramer of integrase (IN) assembled on viral DNA ends in a stable complex, known as the intasome1,2. How the intasome interfaces with chromosomal DNA, which exists in the form of nucleosomal arrays, is curren
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a76dbc412cf9ab9f53c57d37bc43c9ff
https://doi.org/10.1038/nature14495
https://doi.org/10.1038/nature14495
Publikováno v:
Structure(London, England:1993)
Summary gp130 is a shared signal-transducing membrane-associated receptor for several hematopoietic cytokines. The 30 Å resolution cryo-electron microscopy (cryo-EM) structure of the Interleukin 11(IL-11)-IL-11 Receptor-gp130 extracellular complex r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa99dcfa65f50543c0dbbbca861700b1
https://doi.org/10.1016/j.str.2007.02.006
https://doi.org/10.1016/j.str.2007.02.006
Autor:
Arjen Q. Bakker, Rishi Matadeen, Abraham J. Koster, Tim Beaumont, Roman I. Koning, Brenda M. Westerhuis, Sarah J. Butcher, Shabih Shakeel, Aušra Domanska, Katja C. Wolthers
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-8 (2016)
Nature communications, 7. Nature Publishing Group
Nature Communications
Nature Communications, 7
Nature communications, 7. Nature Publishing Group
Nature Communications
Nature Communications, 7
The poorly studied picornavirus, human parechovirus 3 (HPeV3) causes neonatal sepsis with no therapies available. Our 4.3-Å resolution structure of HPeV3 on its own and at 15 Å resolution in complex with human monoclonal antibody Fabs demonstrates
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7058e2d6cd6c29860043712ccf6fad38
http://hdl.handle.net/10138/165877
http://hdl.handle.net/10138/165877
Autor:
Rishi Matadeen, Bart Alewijnse, Sacha De Carlo, Raimond B. G. Ravelli, Marin van Heel, Gijs van Duinen, Michael Schatz, Peter J. Peters, Jan Pieter Abrahams, Pavel Afanasyev, Rodrigo Villares Portugal
Publikováno v:
SCIENTIFIC REPORTS, 5, 10317
SCIENTIFIC REPORTS
Scientific Reports, 5:10317. Nature Publishing Group
Scientific Reports
SCIENTIFIC REPORTS
Scientific Reports, 5:10317. Nature Publishing Group
Scientific Reports
Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets contai
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd2b21019e40cad5c3c905c064d60e26
http://hdl.handle.net/1887/49694
http://hdl.handle.net/1887/49694
A detailed structural knowledge of the complex and dynamic interplay of the ribosome with mRNA, tRNA, and other protein factors is necessary to understand translation in molecular terms. Cryo-electron microscopy together with single-particle analysis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::168a3db1572d0e54758224cc49aa189d
https://doi.org/10.1128/9781555818142.ch4
https://doi.org/10.1128/9781555818142.ch4
Autor:
Richard Brimacombe, E van der Sluis, Andrei A. Leonov, K. von Knoblauch, Alexey A. Bogdanov, Tillmann Pape, Olga A. Dontsova, Florian Mueller, Monika Osswald, M. van Heel, Rishi Matadeen, Petr V. Sergiev
Publikováno v:
Journal of Molecular Biology. 307:1341-1349
Insertions were introduced by a two-step mutagenesis procedure into each of five double-helical regions of Escherichia coli 23 S rRNA, so as to extend the helix concerned by 17 bp. The helices chosen were at sites within the 23 S molecule (h9, h25, h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::30abe01ed5a21eb182965141cef5a3a2
https://doi.org/10.1006/jmbi.2001.4547
https://doi.org/10.1006/jmbi.2001.4547